Hb_001452_140

Information

Type -
Description -
Location Contig1452: 278393-280921
Sequence    

Annotation

kegg
ID vvi:104879859
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_010942698.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID S8E7V9
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_02828 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001452_140 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
2 Hb_002387_020 0.1071256285 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
3 Hb_019973_030 0.1574705516 - - -
4 Hb_003751_110 0.1576705961 - - unknown [Lotus japonicus]
5 Hb_004226_020 0.163552825 - - -
6 Hb_001584_310 0.1744321416 - - hypothetical protein POPTR_0013s00630g [Populus trichocarpa]
7 Hb_096962_020 0.1770206526 - - -
8 Hb_003751_060 0.1800408444 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
9 Hb_000014_100 0.1858792444 - - -
10 Hb_011716_040 0.1941194326 - - -
11 Hb_003462_030 0.1945669034 - - hypothetical protein UMN_5210_01, partial [Pinus radiata]
12 Hb_027380_160 0.1969885287 - - -
13 Hb_015456_020 0.1971042348 - - -
14 Hb_001341_040 0.1972338732 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
15 Hb_000364_180 0.1972750827 - - PREDICTED: PI-PLC X domain-containing protein At5g67130 [Jatropha curcas]
16 Hb_002249_140 0.2034647362 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
17 Hb_001001_160 0.2042534402 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
18 Hb_000771_110 0.2065674072 - - protein phosphatase 2C [Hevea brasiliensis]
19 Hb_005657_010 0.20742423 - - -
20 Hb_000733_060 0.2076073011 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001452_140 Hb_001452_140 Hb_002387_020 Hb_002387_020 Hb_001452_140--Hb_002387_020 Hb_019973_030 Hb_019973_030 Hb_001452_140--Hb_019973_030 Hb_003751_110 Hb_003751_110 Hb_001452_140--Hb_003751_110 Hb_004226_020 Hb_004226_020 Hb_001452_140--Hb_004226_020 Hb_001584_310 Hb_001584_310 Hb_001452_140--Hb_001584_310 Hb_096962_020 Hb_096962_020 Hb_001452_140--Hb_096962_020 Hb_003751_060 Hb_003751_060 Hb_002387_020--Hb_003751_060 Hb_035947_010 Hb_035947_010 Hb_002387_020--Hb_035947_010 Hb_000406_040 Hb_000406_040 Hb_002387_020--Hb_000406_040 Hb_000487_100 Hb_000487_100 Hb_002387_020--Hb_000487_100 Hb_003878_120 Hb_003878_120 Hb_002387_020--Hb_003878_120 Hb_019973_030--Hb_004226_020 Hb_007245_090 Hb_007245_090 Hb_019973_030--Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_019973_030--Hb_000014_100 Hb_008376_010 Hb_008376_010 Hb_019973_030--Hb_008376_010 Hb_001930_070 Hb_001930_070 Hb_019973_030--Hb_001930_070 Hb_003893_170 Hb_003893_170 Hb_003751_110--Hb_003893_170 Hb_015456_020 Hb_015456_020 Hb_003751_110--Hb_015456_020 Hb_010931_110 Hb_010931_110 Hb_003751_110--Hb_010931_110 Hb_001341_040 Hb_001341_040 Hb_003751_110--Hb_001341_040 Hb_004032_240 Hb_004032_240 Hb_003751_110--Hb_004032_240 Hb_004968_100 Hb_004968_100 Hb_004226_020--Hb_004968_100 Hb_034299_060 Hb_034299_060 Hb_004226_020--Hb_034299_060 Hb_005357_150 Hb_005357_150 Hb_004226_020--Hb_005357_150 Hb_163145_020 Hb_163145_020 Hb_004226_020--Hb_163145_020 Hb_000429_170 Hb_000429_170 Hb_004226_020--Hb_000429_170 Hb_002973_080 Hb_002973_080 Hb_004226_020--Hb_002973_080 Hb_001158_040 Hb_001158_040 Hb_001584_310--Hb_001158_040 Hb_006824_020 Hb_006824_020 Hb_001584_310--Hb_006824_020 Hb_006775_080 Hb_006775_080 Hb_001584_310--Hb_006775_080 Hb_001584_330 Hb_001584_330 Hb_001584_310--Hb_001584_330 Hb_001584_310--Hb_034299_060 Hb_002249_140 Hb_002249_140 Hb_001584_310--Hb_002249_140 Hb_011716_040 Hb_011716_040 Hb_096962_020--Hb_011716_040 Hb_027380_160 Hb_027380_160 Hb_096962_020--Hb_027380_160 Hb_000340_010 Hb_000340_010 Hb_096962_020--Hb_000340_010 Hb_000033_050 Hb_000033_050 Hb_096962_020--Hb_000033_050 Hb_153150_010 Hb_153150_010 Hb_096962_020--Hb_153150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.882735 0.439667 0.170577 0.0517422 1.56246 0.248676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.981751 0.223599 0.845055 0.259108 0.0855885

CAGE analysis