Hb_003878_120

Information

Type transcription factor
Description TF Family: MBF1
Location Contig3878: 103155-105652
Sequence    

Annotation

kegg
ID atr:s00130p00113100
description AMTR_s00130p00113100; hypothetical protein
nr
ID XP_010920210.1
description PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
swissprot
ID Q9LXT3
description Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1
trembl
ID W1NSB0
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00130p00113100 PE=4 SV=1
Gene Ontology
ID GO:0005730
description multiprotein-bridging factor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_120 0.0 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
2 Hb_000187_090 0.1226828946 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
3 Hb_000742_250 0.1314317341 - - Tubulin beta-6 chain [Gossypium arboreum]
4 Hb_006649_080 0.1316220825 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
5 Hb_000041_150 0.133147251 - - Stachyose synthase precursor, putative [Ricinus communis]
6 Hb_000364_180 0.1344198555 - - PREDICTED: PI-PLC X domain-containing protein At5g67130 [Jatropha curcas]
7 Hb_153258_010 0.1351614475 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
8 Hb_080147_030 0.1397969183 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]
9 Hb_000369_060 0.1411162887 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_001221_170 0.1441261982 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
11 Hb_000487_100 0.1456633629 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
12 Hb_000805_260 0.1463364541 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
13 Hb_000879_130 0.1463374213 - - -
14 Hb_185467_010 0.1544157394 - - -
15 Hb_033834_010 0.1551195408 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_002400_270 0.1568394733 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
17 Hb_017168_010 0.1568616488 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000120_050 0.1569550909 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
19 Hb_000619_080 0.1575186058 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
20 Hb_007765_060 0.1591649964 - - Proliferating cell nuclear antigen [Theobroma cacao]

Gene co-expression network

sample Hb_003878_120 Hb_003878_120 Hb_000187_090 Hb_000187_090 Hb_003878_120--Hb_000187_090 Hb_000742_250 Hb_000742_250 Hb_003878_120--Hb_000742_250 Hb_006649_080 Hb_006649_080 Hb_003878_120--Hb_006649_080 Hb_000041_150 Hb_000041_150 Hb_003878_120--Hb_000041_150 Hb_000364_180 Hb_000364_180 Hb_003878_120--Hb_000364_180 Hb_153258_010 Hb_153258_010 Hb_003878_120--Hb_153258_010 Hb_000187_090--Hb_000041_150 Hb_001221_170 Hb_001221_170 Hb_000187_090--Hb_001221_170 Hb_000187_090--Hb_153258_010 Hb_000463_140 Hb_000463_140 Hb_000187_090--Hb_000463_140 Hb_006111_070 Hb_006111_070 Hb_000187_090--Hb_006111_070 Hb_002400_270 Hb_002400_270 Hb_000742_250--Hb_002400_270 Hb_001846_060 Hb_001846_060 Hb_000742_250--Hb_001846_060 Hb_000742_250--Hb_006649_080 Hb_185467_010 Hb_185467_010 Hb_000742_250--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_000742_250--Hb_007786_010 Hb_004096_020 Hb_004096_020 Hb_000742_250--Hb_004096_020 Hb_006649_080--Hb_185467_010 Hb_033834_010 Hb_033834_010 Hb_006649_080--Hb_033834_010 Hb_000359_250 Hb_000359_250 Hb_006649_080--Hb_000359_250 Hb_006649_080--Hb_004096_020 Hb_000041_150--Hb_153258_010 Hb_127003_010 Hb_127003_010 Hb_000041_150--Hb_127003_010 Hb_000997_210 Hb_000997_210 Hb_000041_150--Hb_000997_210 Hb_000041_150--Hb_001221_170 Hb_000120_050 Hb_000120_050 Hb_000041_150--Hb_000120_050 Hb_000997_090 Hb_000997_090 Hb_000364_180--Hb_000997_090 Hb_000196_040 Hb_000196_040 Hb_000364_180--Hb_000196_040 Hb_005730_030 Hb_005730_030 Hb_000364_180--Hb_005730_030 Hb_000364_180--Hb_000120_050 Hb_000270_780 Hb_000270_780 Hb_000364_180--Hb_000270_780 Hb_042083_070 Hb_042083_070 Hb_000364_180--Hb_042083_070 Hb_007558_140 Hb_007558_140 Hb_153258_010--Hb_007558_140 Hb_153258_010--Hb_000120_050 Hb_153258_010--Hb_000997_210 Hb_003297_030 Hb_003297_030 Hb_153258_010--Hb_003297_030 Hb_002027_130 Hb_002027_130 Hb_153258_010--Hb_002027_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5042 8.75679 5.44346 2.0382 20.945 10.6654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.51445 3.4142 19.7525 4.06379 4.12871

CAGE analysis