Hb_127003_010

Information

Type -
Description -
Location Contig127003: 8215-12208
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19610g
description POPTRDRAFT_802200; hypothetical protein
nr
ID XP_012071631.1
description PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3R5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04052 PE=4 SV=1
Gene Ontology
ID GO:0000212
description multipolar spindle isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08311: 10843-11932 , PASA_asmbl_08312: 10875-16350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127003_010 0.0 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
2 Hb_000041_150 0.0864556591 - - Stachyose synthase precursor, putative [Ricinus communis]
3 Hb_182424_010 0.1263794529 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
4 Hb_170193_010 0.1274808078 - - JHL25H03.10 [Jatropha curcas]
5 Hb_153258_010 0.1318852047 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
6 Hb_000139_380 0.1319003642 - - conserved hypothetical protein [Ricinus communis]
7 Hb_098993_010 0.1335811112 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
8 Hb_000088_040 0.134037962 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
9 Hb_000997_210 0.1405593451 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
10 Hb_000291_280 0.1407883042 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
11 Hb_011287_090 0.1468575344 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
12 Hb_085863_020 0.1486677272 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
13 Hb_000120_050 0.1503426532 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
14 Hb_011639_050 0.1503691172 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004440_100 0.1510710332 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
16 Hb_005211_160 0.1522451086 - - Protein PNS1, putative [Ricinus communis]
17 Hb_000369_060 0.1524254465 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_000836_630 0.1538174481 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
19 Hb_003030_020 0.1553252346 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
20 Hb_002326_050 0.1558729965 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]

Gene co-expression network

sample Hb_127003_010 Hb_127003_010 Hb_000041_150 Hb_000041_150 Hb_127003_010--Hb_000041_150 Hb_182424_010 Hb_182424_010 Hb_127003_010--Hb_182424_010 Hb_170193_010 Hb_170193_010 Hb_127003_010--Hb_170193_010 Hb_153258_010 Hb_153258_010 Hb_127003_010--Hb_153258_010 Hb_000139_380 Hb_000139_380 Hb_127003_010--Hb_000139_380 Hb_098993_010 Hb_098993_010 Hb_127003_010--Hb_098993_010 Hb_000041_150--Hb_153258_010 Hb_000997_210 Hb_000997_210 Hb_000041_150--Hb_000997_210 Hb_000187_090 Hb_000187_090 Hb_000041_150--Hb_000187_090 Hb_001221_170 Hb_001221_170 Hb_000041_150--Hb_001221_170 Hb_000120_050 Hb_000120_050 Hb_000041_150--Hb_000120_050 Hb_099864_010 Hb_099864_010 Hb_182424_010--Hb_099864_010 Hb_011287_090 Hb_011287_090 Hb_182424_010--Hb_011287_090 Hb_011218_060 Hb_011218_060 Hb_182424_010--Hb_011218_060 Hb_182424_010--Hb_170193_010 Hb_182424_010--Hb_000041_150 Hb_170193_010--Hb_000139_380 Hb_005211_160 Hb_005211_160 Hb_170193_010--Hb_005211_160 Hb_085863_020 Hb_085863_020 Hb_170193_010--Hb_085863_020 Hb_002326_050 Hb_002326_050 Hb_170193_010--Hb_002326_050 Hb_170193_010--Hb_011287_090 Hb_007558_140 Hb_007558_140 Hb_153258_010--Hb_007558_140 Hb_153258_010--Hb_000120_050 Hb_153258_010--Hb_000997_210 Hb_003297_030 Hb_003297_030 Hb_153258_010--Hb_003297_030 Hb_002027_130 Hb_002027_130 Hb_153258_010--Hb_002027_130 Hb_006935_050 Hb_006935_050 Hb_000139_380--Hb_006935_050 Hb_000139_380--Hb_098993_010 Hb_000025_480 Hb_000025_480 Hb_000139_380--Hb_000025_480 Hb_000080_190 Hb_000080_190 Hb_000139_380--Hb_000080_190 Hb_000139_380--Hb_011287_090 Hb_005280_010 Hb_005280_010 Hb_000139_380--Hb_005280_010 Hb_098993_010--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_098993_010--Hb_000025_480 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_098993_010--Hb_007558_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.56402 0.456518 0.953112 0.984143 4.80766 3.45943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.88327 1.67735 6.62338 1.13787 0.602101

CAGE analysis