Hb_085863_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig85863: 5395-11059
Sequence    

Annotation

kegg
ID rcu:RCOM_0835000
description DNA binding protein, putative
nr
ID XP_012093140.1
description PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
swissprot
ID Q8VWK4
description Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1
trembl
ID A0A067L7W7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16345 PE=4 SV=1
Gene Ontology
ID GO:0000786
description telomere repeat-binding factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60668: 5436-6602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085863_020 0.0 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
2 Hb_022148_010 0.1330439997 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
3 Hb_000139_380 0.1380902109 - - conserved hypothetical protein [Ricinus communis]
4 Hb_170193_010 0.1454750474 - - JHL25H03.10 [Jatropha curcas]
5 Hb_127003_010 0.1486677272 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
6 Hb_001004_040 0.1521793377 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011287_090 0.1545043257 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
8 Hb_005211_160 0.1633532281 - - Protein PNS1, putative [Ricinus communis]
9 Hb_002739_110 0.1641586012 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
10 Hb_000041_150 0.1850185866 - - Stachyose synthase precursor, putative [Ricinus communis]
11 Hb_141939_010 0.1864040582 - - PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_001767_090 0.1868443301 - - ankyrin repeat protein [Bruguiera gymnorhiza]
13 Hb_012395_190 0.187515353 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
14 Hb_005280_010 0.1898441145 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
15 Hb_073452_010 0.1908018864 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_000479_130 0.1912465147 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
17 Hb_004306_060 0.1934726463 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
18 Hb_000122_130 0.1952113538 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000025_480 0.1953003998 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
20 Hb_011639_050 0.1961009371 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_085863_020 Hb_085863_020 Hb_022148_010 Hb_022148_010 Hb_085863_020--Hb_022148_010 Hb_000139_380 Hb_000139_380 Hb_085863_020--Hb_000139_380 Hb_170193_010 Hb_170193_010 Hb_085863_020--Hb_170193_010 Hb_127003_010 Hb_127003_010 Hb_085863_020--Hb_127003_010 Hb_001004_040 Hb_001004_040 Hb_085863_020--Hb_001004_040 Hb_011287_090 Hb_011287_090 Hb_085863_020--Hb_011287_090 Hb_000291_280 Hb_000291_280 Hb_022148_010--Hb_000291_280 Hb_010436_020 Hb_010436_020 Hb_022148_010--Hb_010436_020 Hb_000122_130 Hb_000122_130 Hb_022148_010--Hb_000122_130 Hb_010436_030 Hb_010436_030 Hb_022148_010--Hb_010436_030 Hb_022148_010--Hb_000139_380 Hb_006935_050 Hb_006935_050 Hb_000139_380--Hb_006935_050 Hb_098993_010 Hb_098993_010 Hb_000139_380--Hb_098993_010 Hb_000025_480 Hb_000025_480 Hb_000139_380--Hb_000025_480 Hb_000080_190 Hb_000080_190 Hb_000139_380--Hb_000080_190 Hb_000139_380--Hb_011287_090 Hb_005280_010 Hb_005280_010 Hb_000139_380--Hb_005280_010 Hb_170193_010--Hb_000139_380 Hb_170193_010--Hb_127003_010 Hb_005211_160 Hb_005211_160 Hb_170193_010--Hb_005211_160 Hb_002326_050 Hb_002326_050 Hb_170193_010--Hb_002326_050 Hb_170193_010--Hb_011287_090 Hb_000041_150 Hb_000041_150 Hb_127003_010--Hb_000041_150 Hb_182424_010 Hb_182424_010 Hb_127003_010--Hb_182424_010 Hb_153258_010 Hb_153258_010 Hb_127003_010--Hb_153258_010 Hb_127003_010--Hb_000139_380 Hb_127003_010--Hb_098993_010 Hb_002739_110 Hb_002739_110 Hb_001004_040--Hb_002739_110 Hb_150651_050 Hb_150651_050 Hb_001004_040--Hb_150651_050 Hb_000380_180 Hb_000380_180 Hb_001004_040--Hb_000380_180 Hb_001004_040--Hb_000025_480 Hb_000249_130 Hb_000249_130 Hb_001004_040--Hb_000249_130 Hb_000049_070 Hb_000049_070 Hb_011287_090--Hb_000049_070 Hb_002874_070 Hb_002874_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_000236_250 Hb_000236_250 Hb_011287_090--Hb_000236_250 Hb_011287_090--Hb_006935_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.77 0.948832 2.25119 1.4385 9.38434 15.2517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70355 3.6464 28.0015 5.92638 2.96406

CAGE analysis