Hb_001004_040

Information

Type -
Description -
Location Contig1004: 101911-104844
Sequence    

Annotation

kegg
ID rcu:RCOM_0707320
description hypothetical protein
nr
ID XP_002516138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LUP9
description Putative F-box protein At3g17480 OS=Arabidopsis thaliana GN=At3g17480 PE=3 SV=1
trembl
ID B9RQW9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002739_110 0.1107394897 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
3 Hb_150651_050 0.1458781895 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_000380_180 0.1487931378 - - kinase, putative [Ricinus communis]
5 Hb_085863_020 0.1521793377 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
6 Hb_000025_480 0.1527553052 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
7 Hb_000249_130 0.1580606134 - - hypothetical protein RCOM_0254640 [Ricinus communis]
8 Hb_024952_010 0.1627418245 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
9 Hb_004800_160 0.1635265076 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
10 Hb_001396_230 0.1639350057 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
11 Hb_000576_040 0.1646167814 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
12 Hb_170193_010 0.167817872 - - JHL25H03.10 [Jatropha curcas]
13 Hb_003497_030 0.16959619 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_152439_020 0.17010879 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
15 Hb_030736_010 0.1714812722 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000139_380 0.1765058509 - - conserved hypothetical protein [Ricinus communis]
17 Hb_143629_090 0.1785753362 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
18 Hb_003060_070 0.1819517624 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_001140_200 0.1829441291 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
20 Hb_000157_010 0.1834053458 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_001004_040 Hb_001004_040 Hb_002739_110 Hb_002739_110 Hb_001004_040--Hb_002739_110 Hb_150651_050 Hb_150651_050 Hb_001004_040--Hb_150651_050 Hb_000380_180 Hb_000380_180 Hb_001004_040--Hb_000380_180 Hb_085863_020 Hb_085863_020 Hb_001004_040--Hb_085863_020 Hb_000025_480 Hb_000025_480 Hb_001004_040--Hb_000025_480 Hb_000249_130 Hb_000249_130 Hb_001004_040--Hb_000249_130 Hb_001396_230 Hb_001396_230 Hb_002739_110--Hb_001396_230 Hb_002739_110--Hb_000380_180 Hb_152439_020 Hb_152439_020 Hb_002739_110--Hb_152439_020 Hb_002739_110--Hb_000249_130 Hb_008085_040 Hb_008085_040 Hb_002739_110--Hb_008085_040 Hb_004800_160 Hb_004800_160 Hb_150651_050--Hb_004800_160 Hb_000120_120 Hb_000120_120 Hb_150651_050--Hb_000120_120 Hb_003030_080 Hb_003030_080 Hb_150651_050--Hb_003030_080 Hb_150651_050--Hb_002739_110 Hb_024952_010 Hb_024952_010 Hb_150651_050--Hb_024952_010 Hb_003497_030 Hb_003497_030 Hb_000380_180--Hb_003497_030 Hb_001767_010 Hb_001767_010 Hb_000380_180--Hb_001767_010 Hb_000427_030 Hb_000427_030 Hb_000380_180--Hb_000427_030 Hb_000260_060 Hb_000260_060 Hb_000380_180--Hb_000260_060 Hb_000380_180--Hb_000249_130 Hb_022148_010 Hb_022148_010 Hb_085863_020--Hb_022148_010 Hb_000139_380 Hb_000139_380 Hb_085863_020--Hb_000139_380 Hb_170193_010 Hb_170193_010 Hb_085863_020--Hb_170193_010 Hb_127003_010 Hb_127003_010 Hb_085863_020--Hb_127003_010 Hb_011287_090 Hb_011287_090 Hb_085863_020--Hb_011287_090 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_143629_090 Hb_143629_090 Hb_000249_130--Hb_143629_090 Hb_000249_130--Hb_003030_080 Hb_000249_130--Hb_003497_030 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.454 0.0613039 0.175901 0.097966 0.647716 1.09291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.583623 0.51016 2.68035 0.336152 0.05329

CAGE analysis