Hb_011287_090

Information

Type -
Description -
Location Contig11287: 67480-70189
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06770g
description POPTRDRAFT_1089666; hypothetical protein
nr
ID XP_011041535.1
description PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
swissprot
ID Q9S845
description GDP-mannose transporter GONST3 OS=Arabidopsis thaliana GN=GONST3 PE=2 SV=1
trembl
ID B9HT99
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06770g PE=4 SV=1
Gene Ontology
ID GO:0005794
description gdp-mannose transporter gonst3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03895: 67137-70148
cDNA
(Sanger)
(ID:Location)		 010_I21.ab1: 67137-69042 , 011_K12.ab1: 67137-69072 , 036_F12.ab1: 67170-69138 , 041_D04.ab1: 67170-69027 , 044_A09.ab1: 67137-69060

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011287_090 0.0 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
2 Hb_000049_070 0.0952485459 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
3 Hb_002874_070 0.1149962495 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
4 Hb_000077_130 0.116124259 - - PREDICTED: callose synthase 12 [Jatropha curcas]
5 Hb_000139_380 0.117233477 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000236_250 0.1235006617 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006935_050 0.1257520442 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
8 Hb_002326_050 0.1264297365 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
9 Hb_011639_050 0.128253347 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000836_630 0.1288057566 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
11 Hb_004440_100 0.1290451016 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
12 Hb_005280_010 0.132794377 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
13 Hb_185467_020 0.1333974316 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_141939_010 0.136765794 - - PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_000497_140 0.1412820893 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
16 Hb_001433_220 0.1419097425 - - protein phosphatase, putative [Ricinus communis]
17 Hb_012395_190 0.1419598079 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
18 Hb_003106_010 0.1426014297 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
19 Hb_098993_010 0.1427765242 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
20 Hb_001584_110 0.1435716787 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011287_090 Hb_011287_090 Hb_000049_070 Hb_000049_070 Hb_011287_090--Hb_000049_070 Hb_002874_070 Hb_002874_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_000139_380 Hb_000139_380 Hb_011287_090--Hb_000139_380 Hb_000236_250 Hb_000236_250 Hb_011287_090--Hb_000236_250 Hb_006935_050 Hb_006935_050 Hb_011287_090--Hb_006935_050 Hb_000049_070--Hb_000236_250 Hb_007558_140 Hb_007558_140 Hb_000049_070--Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_000049_070--Hb_011918_080 Hb_000479_330 Hb_000479_330 Hb_000049_070--Hb_000479_330 Hb_000898_040 Hb_000898_040 Hb_000049_070--Hb_000898_040 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_000497_140 Hb_000497_140 Hb_000077_130--Hb_000497_140 Hb_000077_130--Hb_001584_110 Hb_012055_020 Hb_012055_020 Hb_000077_130--Hb_012055_020 Hb_000077_130--Hb_000236_250 Hb_000077_130--Hb_002874_070 Hb_006091_030 Hb_006091_030 Hb_000077_130--Hb_006091_030 Hb_000139_380--Hb_006935_050 Hb_098993_010 Hb_098993_010 Hb_000139_380--Hb_098993_010 Hb_000025_480 Hb_000025_480 Hb_000139_380--Hb_000025_480 Hb_000080_190 Hb_000080_190 Hb_000139_380--Hb_000080_190 Hb_005280_010 Hb_005280_010 Hb_000139_380--Hb_005280_010 Hb_000236_250--Hb_001584_110 Hb_014568_030 Hb_014568_030 Hb_000236_250--Hb_014568_030 Hb_000236_250--Hb_005280_010 Hb_002890_340 Hb_002890_340 Hb_000236_250--Hb_002890_340 Hb_000236_250--Hb_185467_020 Hb_001017_040 Hb_001017_040 Hb_000236_250--Hb_001017_040 Hb_001433_220 Hb_001433_220 Hb_006935_050--Hb_001433_220 Hb_023292_010 Hb_023292_010 Hb_006935_050--Hb_023292_010 Hb_000099_200 Hb_000099_200 Hb_006935_050--Hb_000099_200 Hb_006935_050--Hb_000025_480 Hb_006935_050--Hb_000049_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.19 12.8481 15.5383 19.5997 57.9694 106.148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.0616 20.363 105.722 21.035 9.15019

CAGE analysis