Hb_001433_220

Information

Type -
Description -
Location Contig1433: 205690-210165
Sequence    

Annotation

kegg
ID rcu:RCOM_1434210
description protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512477.1
description protein phosphatase, putative [Ricinus communis]
swissprot
ID O80492
description Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1
trembl
ID B9RFF8
description Protein phosphatase, putative OS=Ricinus communis GN=RCOM_1434210 PE=4 SV=1
Gene Ontology
ID GO:0005886
description phosphatase 2c family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11415: 206362-210149 , PASA_asmbl_11416: 208787-209041
cDNA
(Sanger)
(ID:Location)		 034_O12.ab1: 207860-210058 , 043_O23.ab1: 207940-210058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_220 0.0 - - protein phosphatase, putative [Ricinus communis]
2 Hb_006935_050 0.080379086 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
3 Hb_000229_040 0.1171418748 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
4 Hb_003195_060 0.1225869354 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
5 Hb_000049_070 0.1258769262 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
6 Hb_000436_080 0.1329291608 - - unnamed protein product [Coffea canephora]
7 Hb_063134_010 0.1351060914 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
8 Hb_000031_030 0.1370301864 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
9 Hb_001902_050 0.1379770117 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
10 Hb_000023_140 0.1389647232 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
11 Hb_008511_050 0.1416879684 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
12 Hb_011287_090 0.1419097425 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
13 Hb_005539_290 0.1420656004 - - unknown [Lotus japonicus]
14 Hb_009048_040 0.1432917527 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
15 Hb_012340_010 0.1433648369 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
16 Hb_000049_040 0.1438167582 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
17 Hb_005754_060 0.1458210657 - - conserved hypothetical protein [Ricinus communis]
18 Hb_025814_010 0.1463943278 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
19 Hb_000103_140 0.1480589919 - - ribosomal protein S3a [Populus trichocarpa]
20 Hb_021409_020 0.1490166438 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]

Gene co-expression network

sample Hb_001433_220 Hb_001433_220 Hb_006935_050 Hb_006935_050 Hb_001433_220--Hb_006935_050 Hb_000229_040 Hb_000229_040 Hb_001433_220--Hb_000229_040 Hb_003195_060 Hb_003195_060 Hb_001433_220--Hb_003195_060 Hb_000049_070 Hb_000049_070 Hb_001433_220--Hb_000049_070 Hb_000436_080 Hb_000436_080 Hb_001433_220--Hb_000436_080 Hb_063134_010 Hb_063134_010 Hb_001433_220--Hb_063134_010 Hb_000139_380 Hb_000139_380 Hb_006935_050--Hb_000139_380 Hb_023292_010 Hb_023292_010 Hb_006935_050--Hb_023292_010 Hb_000099_200 Hb_000099_200 Hb_006935_050--Hb_000099_200 Hb_000025_480 Hb_000025_480 Hb_006935_050--Hb_000025_480 Hb_006935_050--Hb_000049_070 Hb_021409_020 Hb_021409_020 Hb_000229_040--Hb_021409_020 Hb_000229_040--Hb_003195_060 Hb_168000_010 Hb_168000_010 Hb_000229_040--Hb_168000_010 Hb_004545_060 Hb_004545_060 Hb_000229_040--Hb_004545_060 Hb_000045_090 Hb_000045_090 Hb_000229_040--Hb_000045_090 Hb_022250_130 Hb_022250_130 Hb_000229_040--Hb_022250_130 Hb_008511_050 Hb_008511_050 Hb_003195_060--Hb_008511_050 Hb_002609_110 Hb_002609_110 Hb_003195_060--Hb_002609_110 Hb_003195_070 Hb_003195_070 Hb_003195_060--Hb_003195_070 Hb_002811_360 Hb_002811_360 Hb_003195_060--Hb_002811_360 Hb_006332_010 Hb_006332_010 Hb_003195_060--Hb_006332_010 Hb_005754_060 Hb_005754_060 Hb_003195_060--Hb_005754_060 Hb_011287_090 Hb_011287_090 Hb_000049_070--Hb_011287_090 Hb_000236_250 Hb_000236_250 Hb_000049_070--Hb_000236_250 Hb_007558_140 Hb_007558_140 Hb_000049_070--Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_000049_070--Hb_011918_080 Hb_000479_330 Hb_000479_330 Hb_000049_070--Hb_000479_330 Hb_000898_040 Hb_000898_040 Hb_000049_070--Hb_000898_040 Hb_001260_030 Hb_001260_030 Hb_000436_080--Hb_001260_030 Hb_000914_070 Hb_000914_070 Hb_000436_080--Hb_000914_070 Hb_007763_060 Hb_007763_060 Hb_000436_080--Hb_007763_060 Hb_006198_080 Hb_006198_080 Hb_000436_080--Hb_006198_080 Hb_000031_030 Hb_000031_030 Hb_000436_080--Hb_000031_030 Hb_007193_100 Hb_007193_100 Hb_063134_010--Hb_007193_100 Hb_029510_140 Hb_029510_140 Hb_063134_010--Hb_029510_140 Hb_003005_020 Hb_003005_020 Hb_063134_010--Hb_003005_020 Hb_000175_070 Hb_000175_070 Hb_063134_010--Hb_000175_070 Hb_000172_370 Hb_000172_370 Hb_063134_010--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_063134_010--Hb_000384_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.4836 4.61297 9.93969 34.323 51.1951 93.6104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6765 33.5482 79.1283 14.8325 9.70131

CAGE analysis