Hb_006935_050

Information

Type -
Description -
Location Contig6935: 61782-65339
Sequence    

Annotation

kegg
ID cic:CICLE_v10022293mg
description hypothetical protein
nr
ID XP_011026385.1
description PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
swissprot
ID O04922
description Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1
trembl
ID V4VT52
description Glutathione peroxidase OS=Citrus clementina GN=CICLE_v10022293mg PE=3 SV=1
Gene Ontology
ID GO:0005768
description probable glutathione peroxidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54514: 61827-65344
cDNA
(Sanger)
(ID:Location)		 002_F11.ab1: 61911-65109 , 028_H11.ab1: 61877-65109 , 043_L06.ab1: 62296-65344 , 050_H11.ab1: 61925-65109

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006935_050 0.0 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
2 Hb_001433_220 0.080379086 - - protein phosphatase, putative [Ricinus communis]
3 Hb_000139_380 0.1106225027 - - conserved hypothetical protein [Ricinus communis]
4 Hb_023292_010 0.1133297269 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_000099_200 0.1167812063 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000025_480 0.1206957005 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
7 Hb_000049_070 0.1210772221 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
8 Hb_012490_040 0.12290841 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
9 Hb_002498_100 0.1231730527 - - bcr-associated protein, bap, putative [Ricinus communis]
10 Hb_011287_090 0.1257520442 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
11 Hb_001811_020 0.1261240036 - - conserved hypothetical protein [Ricinus communis]
12 Hb_183086_060 0.1261749538 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
13 Hb_001902_050 0.127532053 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
14 Hb_003195_060 0.1277594372 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
15 Hb_000186_240 0.1279969282 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
16 Hb_000080_190 0.1280326823 - - -
17 Hb_009048_040 0.1287361918 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
18 Hb_005754_060 0.1292435581 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005625_020 0.1296692299 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
20 Hb_002154_050 0.1298775934 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006935_050 Hb_006935_050 Hb_001433_220 Hb_001433_220 Hb_006935_050--Hb_001433_220 Hb_000139_380 Hb_000139_380 Hb_006935_050--Hb_000139_380 Hb_023292_010 Hb_023292_010 Hb_006935_050--Hb_023292_010 Hb_000099_200 Hb_000099_200 Hb_006935_050--Hb_000099_200 Hb_000025_480 Hb_000025_480 Hb_006935_050--Hb_000025_480 Hb_000049_070 Hb_000049_070 Hb_006935_050--Hb_000049_070 Hb_000229_040 Hb_000229_040 Hb_001433_220--Hb_000229_040 Hb_003195_060 Hb_003195_060 Hb_001433_220--Hb_003195_060 Hb_001433_220--Hb_000049_070 Hb_000436_080 Hb_000436_080 Hb_001433_220--Hb_000436_080 Hb_063134_010 Hb_063134_010 Hb_001433_220--Hb_063134_010 Hb_098993_010 Hb_098993_010 Hb_000139_380--Hb_098993_010 Hb_000139_380--Hb_000025_480 Hb_000080_190 Hb_000080_190 Hb_000139_380--Hb_000080_190 Hb_011287_090 Hb_011287_090 Hb_000139_380--Hb_011287_090 Hb_005280_010 Hb_005280_010 Hb_000139_380--Hb_005280_010 Hb_001073_050 Hb_001073_050 Hb_023292_010--Hb_001073_050 Hb_001357_080 Hb_001357_080 Hb_023292_010--Hb_001357_080 Hb_003018_190 Hb_003018_190 Hb_023292_010--Hb_003018_190 Hb_002603_160 Hb_002603_160 Hb_023292_010--Hb_002603_160 Hb_100804_010 Hb_100804_010 Hb_023292_010--Hb_100804_010 Hb_001811_020 Hb_001811_020 Hb_000099_200--Hb_001811_020 Hb_000029_020 Hb_000029_020 Hb_000099_200--Hb_000029_020 Hb_000186_240 Hb_000186_240 Hb_000099_200--Hb_000186_240 Hb_010638_020 Hb_010638_020 Hb_000099_200--Hb_010638_020 Hb_006693_030 Hb_006693_030 Hb_000099_200--Hb_006693_030 Hb_000115_330 Hb_000115_330 Hb_000099_200--Hb_000115_330 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_000049_070--Hb_011287_090 Hb_000236_250 Hb_000236_250 Hb_000049_070--Hb_000236_250 Hb_007558_140 Hb_007558_140 Hb_000049_070--Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_000049_070--Hb_011918_080 Hb_000479_330 Hb_000479_330 Hb_000049_070--Hb_000479_330 Hb_000898_040 Hb_000898_040 Hb_000049_070--Hb_000898_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.782 19.2822 25.4667 71.1615 130.621 252.089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.66 126.512 279.903 55.411 27.8335

CAGE analysis