Hb_000139_380

Information

Type -
Description -
Location Contig139: 401461-402320
Sequence    

Annotation

kegg
ID rcu:RCOM_0913500
description hypothetical protein
nr
ID XP_002517182.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RTW3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0913500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10668: 401367-401586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006935_050 0.1106225027 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
3 Hb_098993_010 0.1119323045 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
4 Hb_000025_480 0.1149064541 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
5 Hb_000080_190 0.1162989791 - - -
6 Hb_011287_090 0.117233477 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
7 Hb_005280_010 0.1202103664 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
8 Hb_170193_010 0.1207181451 - - JHL25H03.10 [Jatropha curcas]
9 Hb_185467_020 0.1221290846 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_008453_150 0.1225675471 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
11 Hb_005754_060 0.1230433246 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000236_250 0.1235062299 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000122_130 0.1243004935 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001085_170 0.1243982989 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
15 Hb_007943_080 0.1264906 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
16 Hb_006472_010 0.1279788705 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
17 Hb_000110_160 0.1280280053 - - conserved hypothetical protein [Ricinus communis]
18 Hb_188279_010 0.129100019 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
19 Hb_000069_460 0.1291049733 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
20 Hb_003030_020 0.1292931855 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_380 Hb_000139_380 Hb_006935_050 Hb_006935_050 Hb_000139_380--Hb_006935_050 Hb_098993_010 Hb_098993_010 Hb_000139_380--Hb_098993_010 Hb_000025_480 Hb_000025_480 Hb_000139_380--Hb_000025_480 Hb_000080_190 Hb_000080_190 Hb_000139_380--Hb_000080_190 Hb_011287_090 Hb_011287_090 Hb_000139_380--Hb_011287_090 Hb_005280_010 Hb_005280_010 Hb_000139_380--Hb_005280_010 Hb_001433_220 Hb_001433_220 Hb_006935_050--Hb_001433_220 Hb_023292_010 Hb_023292_010 Hb_006935_050--Hb_023292_010 Hb_000099_200 Hb_000099_200 Hb_006935_050--Hb_000099_200 Hb_006935_050--Hb_000025_480 Hb_000049_070 Hb_000049_070 Hb_006935_050--Hb_000049_070 Hb_003297_030 Hb_003297_030 Hb_098993_010--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_098993_010--Hb_000025_480 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_007558_140 Hb_007558_140 Hb_098993_010--Hb_007558_140 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_002687_110 Hb_002687_110 Hb_000080_190--Hb_002687_110 Hb_005625_020 Hb_005625_020 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_004738_040 Hb_004738_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000409_020 Hb_000409_020 Hb_000080_190--Hb_000409_020 Hb_011287_090--Hb_000049_070 Hb_002874_070 Hb_002874_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_000236_250 Hb_000236_250 Hb_011287_090--Hb_000236_250 Hb_011287_090--Hb_006935_050 Hb_005280_010--Hb_000236_250 Hb_049675_010 Hb_049675_010 Hb_005280_010--Hb_049675_010 Hb_071736_010 Hb_071736_010 Hb_005280_010--Hb_071736_010 Hb_000122_130 Hb_000122_130 Hb_005280_010--Hb_000122_130 Hb_011310_070 Hb_011310_070 Hb_005280_010--Hb_011310_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.076 1.59439 2.12938 2.97565 8.33299 13.1694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56327 6.72047 17.8211 5.35063 2.91102

CAGE analysis