Hb_049675_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig49675: 1-1406
Sequence    

Annotation

kegg
ID rcu:RCOM_1613520
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_012083498.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14472 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049675_010 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_000122_130 0.0693144942 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010436_020 0.0739487564 - - Dicer-like protein 4 [Morus notabilis]
4 Hb_012490_040 0.0993153998 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
5 Hb_034271_030 0.1008718685 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
6 Hb_002890_340 0.1012775069 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
7 Hb_005280_010 0.1065265497 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
8 Hb_002039_010 0.1082866991 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_012395_190 0.1094097724 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
10 Hb_189118_010 0.1125166984 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
11 Hb_000236_250 0.1135014581 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010436_030 0.1140898316 - - Ribonuclease III, putative [Ricinus communis]
13 Hb_000088_010 0.1167760752 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000413_180 0.1192181589 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
15 Hb_010710_010 0.1214954362 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
16 Hb_005205_020 0.1227377691 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
17 Hb_003581_140 0.1236671185 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
18 Hb_015306_020 0.1265068437 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
19 Hb_000230_080 0.1293874343 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_001019_060 0.1295219611 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]

Gene co-expression network

sample Hb_049675_010 Hb_049675_010 Hb_000122_130 Hb_000122_130 Hb_049675_010--Hb_000122_130 Hb_010436_020 Hb_010436_020 Hb_049675_010--Hb_010436_020 Hb_012490_040 Hb_012490_040 Hb_049675_010--Hb_012490_040 Hb_034271_030 Hb_034271_030 Hb_049675_010--Hb_034271_030 Hb_002890_340 Hb_002890_340 Hb_049675_010--Hb_002890_340 Hb_005280_010 Hb_005280_010 Hb_049675_010--Hb_005280_010 Hb_000122_130--Hb_010436_020 Hb_000122_130--Hb_012490_040 Hb_000122_130--Hb_002890_340 Hb_012395_190 Hb_012395_190 Hb_000122_130--Hb_012395_190 Hb_000122_130--Hb_005280_010 Hb_010436_020--Hb_034271_030 Hb_010436_030 Hb_010436_030 Hb_010436_020--Hb_010436_030 Hb_001019_060 Hb_001019_060 Hb_010436_020--Hb_001019_060 Hb_010436_020--Hb_012490_040 Hb_012490_040--Hb_034271_030 Hb_000914_070 Hb_000914_070 Hb_012490_040--Hb_000914_070 Hb_003195_060 Hb_003195_060 Hb_012490_040--Hb_003195_060 Hb_012490_040--Hb_002890_340 Hb_027450_010 Hb_027450_010 Hb_034271_030--Hb_027450_010 Hb_000244_160 Hb_000244_160 Hb_034271_030--Hb_000244_160 Hb_001226_020 Hb_001226_020 Hb_034271_030--Hb_001226_020 Hb_000723_260 Hb_000723_260 Hb_034271_030--Hb_000723_260 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_015306_020 Hb_015306_020 Hb_002890_340--Hb_015306_020 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_009111_050 Hb_009111_050 Hb_002890_340--Hb_009111_050 Hb_000236_250 Hb_000236_250 Hb_005280_010--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_005280_010--Hb_071736_010 Hb_011310_070 Hb_011310_070 Hb_005280_010--Hb_011310_070 Hb_000139_380 Hb_000139_380 Hb_005280_010--Hb_000139_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4307 3.08979 0.767123 2.11234 12.0871 20.2223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9155 5.89104 15.418 8.61065 4.94364

CAGE analysis