Hb_001260_030

Information

Type -
Description -
Location Contig1260: 77647-89734
Sequence    

Annotation

kegg
ID rcu:RCOM_0048200
description hypothetical protein
nr
ID XP_002533430.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NYP0
description Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1
trembl
ID B9T5B1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0048200 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 208 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07941: 61682-95287 , PASA_asmbl_07942: 61682-95214
cDNA
(Sanger)
(ID:Location)		 019_K19.ab1: 61868-95287

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001260_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002482_060 0.1383360414 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
3 Hb_000436_080 0.1448977289 - - unnamed protein product [Coffea canephora]
4 Hb_000120_190 0.1481371791 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
5 Hb_007763_060 0.1533169733 - - BnaA02g23510D [Brassica napus]
6 Hb_001998_140 0.1656367714 - - -
7 Hb_006198_090 0.168350232 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
8 Hb_005679_070 0.1703601488 - - hypothetical protein M569_07741, partial [Genlisea aurea]
9 Hb_003688_110 0.174096416 - - -
10 Hb_000810_020 0.1751159036 - - -
11 Hb_002783_060 0.1788021322 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
12 Hb_025190_010 0.1837641308 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006487_060 0.1843213443 - - Defective in cullin neddylation protein, putative [Ricinus communis]
14 Hb_029142_020 0.188600447 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
15 Hb_005731_140 0.1887968616 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
16 Hb_005085_030 0.1894420617 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
17 Hb_006663_090 0.1951533199 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
18 Hb_115477_010 0.1967425554 - - Protein dom-3, putative [Ricinus communis]
19 Hb_002205_060 0.1981972449 - - -
20 Hb_074979_010 0.2030682301 - - hypothetical protein AALP_AA2G213100 [Arabis alpina]

Gene co-expression network

sample Hb_001260_030 Hb_001260_030 Hb_002482_060 Hb_002482_060 Hb_001260_030--Hb_002482_060 Hb_000436_080 Hb_000436_080 Hb_001260_030--Hb_000436_080 Hb_000120_190 Hb_000120_190 Hb_001260_030--Hb_000120_190 Hb_007763_060 Hb_007763_060 Hb_001260_030--Hb_007763_060 Hb_001998_140 Hb_001998_140 Hb_001260_030--Hb_001998_140 Hb_006198_090 Hb_006198_090 Hb_001260_030--Hb_006198_090 Hb_002482_060--Hb_000120_190 Hb_005731_140 Hb_005731_140 Hb_002482_060--Hb_005731_140 Hb_166480_010 Hb_166480_010 Hb_002482_060--Hb_166480_010 Hb_002482_060--Hb_006198_090 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010 Hb_002482_060--Hb_007763_060 Hb_001433_220 Hb_001433_220 Hb_000436_080--Hb_001433_220 Hb_000914_070 Hb_000914_070 Hb_000436_080--Hb_000914_070 Hb_000436_080--Hb_007763_060 Hb_006198_080 Hb_006198_080 Hb_000436_080--Hb_006198_080 Hb_000031_030 Hb_000031_030 Hb_000436_080--Hb_000031_030 Hb_010368_030 Hb_010368_030 Hb_000120_190--Hb_010368_030 Hb_175976_010 Hb_175976_010 Hb_000120_190--Hb_175976_010 Hb_000120_190--Hb_166480_010 Hb_029142_020 Hb_029142_020 Hb_000120_190--Hb_029142_020 Hb_000120_190--Hb_006198_090 Hb_006487_060 Hb_006487_060 Hb_007763_060--Hb_006487_060 Hb_008096_030 Hb_008096_030 Hb_007763_060--Hb_008096_030 Hb_152554_010 Hb_152554_010 Hb_007763_060--Hb_152554_010 Hb_028420_020 Hb_028420_020 Hb_007763_060--Hb_028420_020 Hb_168973_010 Hb_168973_010 Hb_007763_060--Hb_168973_010 Hb_001998_140--Hb_006198_090 Hb_005679_070 Hb_005679_070 Hb_001998_140--Hb_005679_070 Hb_007188_030 Hb_007188_030 Hb_001998_140--Hb_007188_030 Hb_001998_140--Hb_002482_060 Hb_026228_010 Hb_026228_010 Hb_001998_140--Hb_026228_010 Hb_010565_040 Hb_010565_040 Hb_001998_140--Hb_010565_040 Hb_003656_150 Hb_003656_150 Hb_006198_090--Hb_003656_150 Hb_006198_090--Hb_007188_030 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.3528 15.6236 11.4912 172.306 24.4539 475.414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.946 65.5741 194.251 67.1699 60.1591

CAGE analysis