Hb_168973_010

Information

Type -
Description -
Location Contig168973: 786-2292
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168973_010 0.0 - - -
2 Hb_008096_030 0.0798983935 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
3 Hb_115477_010 0.1163672439 - - Protein dom-3, putative [Ricinus communis]
4 Hb_115107_010 0.1260187941 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
5 Hb_005023_030 0.1263229155 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
6 Hb_007763_060 0.1354890575 - - BnaA02g23510D [Brassica napus]
7 Hb_000074_060 0.1364505621 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
8 Hb_006663_090 0.1370420225 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
9 Hb_010565_010 0.1393524181 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
10 Hb_007026_040 0.1415328494 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
11 Hb_000825_030 0.143381968 - - zinc binding dehydrogenase, putative [Ricinus communis]
12 Hb_000696_350 0.1454172226 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
13 Hb_000679_150 0.1460961699 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
14 Hb_152554_010 0.1462540785 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
15 Hb_076875_020 0.1471975525 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_002445_120 0.148545469 - - secretory carrier membrane protein, putative [Ricinus communis]
17 Hb_148079_010 0.1485821038 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
18 Hb_019053_010 0.1493327235 - - -
19 Hb_009529_040 0.1496293948 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
20 Hb_001135_140 0.1514995445 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]

Gene co-expression network

sample Hb_168973_010 Hb_168973_010 Hb_008096_030 Hb_008096_030 Hb_168973_010--Hb_008096_030 Hb_115477_010 Hb_115477_010 Hb_168973_010--Hb_115477_010 Hb_115107_010 Hb_115107_010 Hb_168973_010--Hb_115107_010 Hb_005023_030 Hb_005023_030 Hb_168973_010--Hb_005023_030 Hb_007763_060 Hb_007763_060 Hb_168973_010--Hb_007763_060 Hb_000074_060 Hb_000074_060 Hb_168973_010--Hb_000074_060 Hb_002445_120 Hb_002445_120 Hb_008096_030--Hb_002445_120 Hb_021238_050 Hb_021238_050 Hb_008096_030--Hb_021238_050 Hb_066768_010 Hb_066768_010 Hb_008096_030--Hb_066768_010 Hb_001250_060 Hb_001250_060 Hb_008096_030--Hb_001250_060 Hb_008096_030--Hb_007763_060 Hb_115477_010--Hb_115107_010 Hb_006663_090 Hb_006663_090 Hb_115477_010--Hb_006663_090 Hb_007026_040 Hb_007026_040 Hb_115477_010--Hb_007026_040 Hb_001386_140 Hb_001386_140 Hb_115477_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_115477_010--Hb_010565_010 Hb_002110_040 Hb_002110_040 Hb_115107_010--Hb_002110_040 Hb_009529_040 Hb_009529_040 Hb_115107_010--Hb_009529_040 Hb_115107_010--Hb_007026_040 Hb_001135_140 Hb_001135_140 Hb_115107_010--Hb_001135_140 Hb_000107_200 Hb_000107_200 Hb_005023_030--Hb_000107_200 Hb_005023_030--Hb_001135_140 Hb_005023_030--Hb_001386_140 Hb_002067_120 Hb_002067_120 Hb_005023_030--Hb_002067_120 Hb_005023_030--Hb_010565_010 Hb_026228_020 Hb_026228_020 Hb_005023_030--Hb_026228_020 Hb_006487_060 Hb_006487_060 Hb_007763_060--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_007763_060--Hb_152554_010 Hb_028420_020 Hb_028420_020 Hb_007763_060--Hb_028420_020 Hb_002482_060 Hb_002482_060 Hb_007763_060--Hb_002482_060 Hb_005527_020 Hb_005527_020 Hb_000074_060--Hb_005527_020 Hb_000329_560 Hb_000329_560 Hb_000074_060--Hb_000329_560 Hb_002562_110 Hb_002562_110 Hb_000074_060--Hb_002562_110 Hb_106415_010 Hb_106415_010 Hb_000074_060--Hb_106415_010 Hb_129672_010 Hb_129672_010 Hb_000074_060--Hb_129672_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.47135 1.33833 3.90172 12.0829 6.10971 20.9051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.71782 5.30947 7.34371 4.77578 3.58268

CAGE analysis