Hb_002482_060

Information

Type -
Description -
Location Contig2482: 90444-90749
Sequence    

Annotation

kegg
ID cic:CICLE_v10033884mg
description hypothetical protein
nr
ID XP_006436728.1
description hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SQ85
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033884mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25835: 74950-90861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002482_060 0.0 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
2 Hb_000120_190 0.0832426632 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
3 Hb_005731_140 0.1161127987 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
4 Hb_166480_010 0.1175249183 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
5 Hb_006198_090 0.1324790479 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
6 Hb_106005_010 0.1329275104 - - EG5651 [Manihot esculenta]
7 Hb_007763_060 0.1377822988 - - BnaA02g23510D [Brassica napus]
8 Hb_001260_030 0.1383360414 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000810_020 0.1390586805 - - -
10 Hb_005085_030 0.1401976859 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
11 Hb_006487_060 0.1457872048 - - Defective in cullin neddylation protein, putative [Ricinus communis]
12 Hb_001998_140 0.1477712122 - - -
13 Hb_007188_020 0.1496189996 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
14 Hb_175976_010 0.1525874375 - - -
15 Hb_000127_090 0.1526215763 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007763_050 0.1534783693 - - hypothetical protein L484_012752 [Morus notabilis]
17 Hb_010368_030 0.1602651251 - - BnaA07g35570D [Brassica napus]
18 Hb_002783_060 0.1611903055 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
19 Hb_001396_250 0.1621806712 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
20 Hb_005679_070 0.1627892041 - - hypothetical protein M569_07741, partial [Genlisea aurea]

Gene co-expression network

sample Hb_002482_060 Hb_002482_060 Hb_000120_190 Hb_000120_190 Hb_002482_060--Hb_000120_190 Hb_005731_140 Hb_005731_140 Hb_002482_060--Hb_005731_140 Hb_166480_010 Hb_166480_010 Hb_002482_060--Hb_166480_010 Hb_006198_090 Hb_006198_090 Hb_002482_060--Hb_006198_090 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_010368_030 Hb_010368_030 Hb_000120_190--Hb_010368_030 Hb_175976_010 Hb_175976_010 Hb_000120_190--Hb_175976_010 Hb_000120_190--Hb_166480_010 Hb_029142_020 Hb_029142_020 Hb_000120_190--Hb_029142_020 Hb_000120_190--Hb_006198_090 Hb_032531_060 Hb_032531_060 Hb_005731_140--Hb_032531_060 Hb_005731_140--Hb_106005_010 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_001396_250 Hb_001396_250 Hb_166480_010--Hb_001396_250 Hb_000015_070 Hb_000015_070 Hb_166480_010--Hb_000015_070 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_003656_150 Hb_003656_150 Hb_006198_090--Hb_003656_150 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_007188_030 Hb_007188_030 Hb_006198_090--Hb_007188_030 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010 Hb_000001_040 Hb_000001_040 Hb_106005_010--Hb_000001_040 Hb_005965_010 Hb_005965_010 Hb_106005_010--Hb_005965_010 Hb_007188_020 Hb_007188_020 Hb_106005_010--Hb_007188_020 Hb_136731_010 Hb_136731_010 Hb_106005_010--Hb_136731_010 Hb_006487_060 Hb_006487_060 Hb_007763_060--Hb_006487_060 Hb_008096_030 Hb_008096_030 Hb_007763_060--Hb_008096_030 Hb_152554_010 Hb_152554_010 Hb_007763_060--Hb_152554_010 Hb_028420_020 Hb_028420_020 Hb_007763_060--Hb_028420_020 Hb_168973_010 Hb_168973_010 Hb_007763_060--Hb_168973_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.03315 4.79248 3.51365 49.9729 9.00855 132.061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7063 37.5861 31.4318 9.6039 10.9506

CAGE analysis