Hb_010368_030

Information

Type -
Description -
Location Contig10368: 20025-21354
Sequence    

Annotation

kegg
ID tcc:TCM_019945
description SNARE-like superfamily protein isoform 1
nr
ID CDX87316.1
description BnaA07g35570D [Brassica napus]
swissprot
ID Q9VUZ1
description Probable trafficking protein particle complex subunit 2 OS=Drosophila melanogaster GN=Trs20 PE=2 SV=2
trembl
ID A0A078DDG8
description BnaA07g35570D protein OS=Brassica napus GN=BnaA07g35570D PE=4 SV=1
Gene Ontology
ID GO:0005737
description trafficking protein particle complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 016_H03r.ab1: 17875-19833

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010368_030 0.0 - - BnaA07g35570D [Brassica napus]
2 Hb_175976_010 0.0998767176 - - -
3 Hb_000086_190 0.117370658 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
4 Hb_000120_190 0.1225393884 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
5 Hb_007534_020 0.1256835347 - - -
6 Hb_007763_050 0.1343189716 - - hypothetical protein L484_012752 [Morus notabilis]
7 Hb_166480_010 0.1420114888 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
8 Hb_001396_250 0.1461237441 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
9 Hb_008221_110 0.1503956038 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
10 Hb_002482_060 0.1602651251 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
11 Hb_000127_090 0.1643736988 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000289_080 0.1647340113 - - conserved hypothetical protein [Ricinus communis]
13 Hb_029142_020 0.1671488581 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
14 Hb_011214_100 0.1696117699 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
15 Hb_014050_010 0.1724821024 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
16 Hb_000668_020 0.1745848591 - - -
17 Hb_012675_080 0.1749714813 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
18 Hb_002784_070 0.1837447051 - - BnaUnng01470D [Brassica napus]
19 Hb_001017_060 0.1850235324 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_006198_090 0.1949361554 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_010368_030 Hb_010368_030 Hb_175976_010 Hb_175976_010 Hb_010368_030--Hb_175976_010 Hb_000086_190 Hb_000086_190 Hb_010368_030--Hb_000086_190 Hb_000120_190 Hb_000120_190 Hb_010368_030--Hb_000120_190 Hb_007534_020 Hb_007534_020 Hb_010368_030--Hb_007534_020 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_166480_010 Hb_166480_010 Hb_010368_030--Hb_166480_010 Hb_008221_110 Hb_008221_110 Hb_175976_010--Hb_008221_110 Hb_175976_010--Hb_007534_020 Hb_175976_010--Hb_000120_190 Hb_000127_090 Hb_000127_090 Hb_175976_010--Hb_000127_090 Hb_001017_060 Hb_001017_060 Hb_175976_010--Hb_001017_060 Hb_000668_020 Hb_000668_020 Hb_000086_190--Hb_000668_020 Hb_012675_080 Hb_012675_080 Hb_000086_190--Hb_012675_080 Hb_000289_080 Hb_000289_080 Hb_000086_190--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_000086_190--Hb_006995_010 Hb_001396_250 Hb_001396_250 Hb_000086_190--Hb_001396_250 Hb_002482_060 Hb_002482_060 Hb_000120_190--Hb_002482_060 Hb_000120_190--Hb_166480_010 Hb_029142_020 Hb_029142_020 Hb_000120_190--Hb_029142_020 Hb_006198_090 Hb_006198_090 Hb_000120_190--Hb_006198_090 Hb_007534_020--Hb_001017_060 Hb_007534_020--Hb_008221_110 Hb_007534_020--Hb_000127_090 Hb_006065_040 Hb_006065_040 Hb_007534_020--Hb_006065_040 Hb_007763_050--Hb_166480_010 Hb_002168_010 Hb_002168_010 Hb_007763_050--Hb_002168_010 Hb_000015_070 Hb_000015_070 Hb_007763_050--Hb_000015_070 Hb_007763_050--Hb_001396_250 Hb_007763_050--Hb_175976_010 Hb_166480_010--Hb_002482_060 Hb_166480_010--Hb_001396_250 Hb_166480_010--Hb_000015_070 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26706 0 0.513502 25.401 2.06442 44.442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1724 20.4183 8.91836 2.90014 1.4974

CAGE analysis