Hb_006065_040

Information

Type -
Description -
Location Contig6065: 63492-66101
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50796: 63594-67219
cDNA
(Sanger)
(ID:Location)		 016_K02.ab1: 63594-67216

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006065_040 0.0 - - -
2 Hb_007534_020 0.1772518127 - - -
3 Hb_000668_020 0.1776467556 - - -
4 Hb_001584_320 0.1897795465 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
5 Hb_000086_190 0.1991993247 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
6 Hb_003029_100 0.2093490122 - - -
7 Hb_015026_150 0.2121476261 - - Nuclease PA3, putative [Ricinus communis]
8 Hb_124141_010 0.2236794842 - - plant origin recognition complex subunit, putative [Ricinus communis]
9 Hb_000204_020 0.2250166363 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
10 Hb_010368_030 0.2265982714 - - BnaA07g35570D [Brassica napus]
11 Hb_000289_080 0.2267169583 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012094_030 0.2281704899 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
13 Hb_014050_010 0.2487518184 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
14 Hb_175976_010 0.2503755938 - - -
15 Hb_008221_110 0.2507723612 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
16 Hb_000684_480 0.2564352948 transcription factor TF Family: Orphans -
17 Hb_116632_010 0.2567169162 - - unnamed protein product [Vitis vinifera]
18 Hb_075745_010 0.2574220284 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
19 Hb_166480_010 0.263908447 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
20 Hb_120052_010 0.2642739668 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]

Gene co-expression network

sample Hb_006065_040 Hb_006065_040 Hb_007534_020 Hb_007534_020 Hb_006065_040--Hb_007534_020 Hb_000668_020 Hb_000668_020 Hb_006065_040--Hb_000668_020 Hb_001584_320 Hb_001584_320 Hb_006065_040--Hb_001584_320 Hb_000086_190 Hb_000086_190 Hb_006065_040--Hb_000086_190 Hb_003029_100 Hb_003029_100 Hb_006065_040--Hb_003029_100 Hb_015026_150 Hb_015026_150 Hb_006065_040--Hb_015026_150 Hb_175976_010 Hb_175976_010 Hb_007534_020--Hb_175976_010 Hb_010368_030 Hb_010368_030 Hb_007534_020--Hb_010368_030 Hb_001017_060 Hb_001017_060 Hb_007534_020--Hb_001017_060 Hb_008221_110 Hb_008221_110 Hb_007534_020--Hb_008221_110 Hb_000127_090 Hb_000127_090 Hb_007534_020--Hb_000127_090 Hb_000668_020--Hb_000086_190 Hb_000289_080 Hb_000289_080 Hb_000668_020--Hb_000289_080 Hb_000668_020--Hb_001584_320 Hb_012675_080 Hb_012675_080 Hb_000668_020--Hb_012675_080 Hb_006995_010 Hb_006995_010 Hb_000668_020--Hb_006995_010 Hb_000668_020--Hb_003029_100 Hb_001584_320--Hb_000086_190 Hb_001584_320--Hb_010368_030 Hb_029142_020 Hb_029142_020 Hb_001584_320--Hb_029142_020 Hb_014050_010 Hb_014050_010 Hb_001584_320--Hb_014050_010 Hb_000086_190--Hb_010368_030 Hb_000086_190--Hb_012675_080 Hb_000086_190--Hb_000289_080 Hb_000086_190--Hb_006995_010 Hb_001396_250 Hb_001396_250 Hb_000086_190--Hb_001396_250 Hb_003029_100--Hb_000289_080 Hb_003029_100--Hb_006995_010 Hb_003656_150 Hb_003656_150 Hb_003029_100--Hb_003656_150 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_006198_090 Hb_006198_090 Hb_003029_100--Hb_006198_090 Hb_017462_010 Hb_017462_010 Hb_015026_150--Hb_017462_010 Hb_116632_010 Hb_116632_010 Hb_015026_150--Hb_116632_010 Hb_015026_150--Hb_014050_010 Hb_001517_030 Hb_001517_030 Hb_015026_150--Hb_001517_030 Hb_002784_070 Hb_002784_070 Hb_015026_150--Hb_002784_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193944 0 0 2.84584 0.135292 9.504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.679503 4.8132 0.775808 0.985655 0

CAGE analysis