Hb_001584_320

Information

Type -
Description -
Location Contig1584: 177494-183092
Sequence    

Annotation

kegg
ID cic:CICLE_v10012993mg
description hypothetical protein
nr
ID XP_012088844.1
description PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13995: 180279-180436 , PASA_asmbl_13997: 181958-182077 , PASA_asmbl_13998: 182251-183019 , PASA_asmbl_13999: 182549-183051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_320 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
2 Hb_000668_020 0.1552122547 - - -
3 Hb_000086_190 0.1601471992 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
4 Hb_006065_040 0.1897795465 - - -
5 Hb_010368_030 0.2012439879 - - BnaA07g35570D [Brassica napus]
6 Hb_029142_020 0.2049603408 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
7 Hb_014050_010 0.21545082 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
8 Hb_015026_150 0.2158949825 - - Nuclease PA3, putative [Ricinus communis]
9 Hb_007534_020 0.2166170379 - - -
10 Hb_012675_080 0.2181722446 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
11 Hb_000289_080 0.2256862999 - - conserved hypothetical protein [Ricinus communis]
12 Hb_075745_010 0.2307275783 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
13 Hb_003029_100 0.2332118371 - - -
14 Hb_001396_250 0.2371783545 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
15 Hb_001089_080 0.2444895471 - - hypothetical protein glysoja_044047 [Glycine soja]
16 Hb_001579_260 0.2452834461 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
17 Hb_011214_100 0.2513243585 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
18 Hb_006995_010 0.2514322293 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
19 Hb_000120_190 0.252527448 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
20 Hb_006198_090 0.2532137142 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_001584_320 Hb_001584_320 Hb_000668_020 Hb_000668_020 Hb_001584_320--Hb_000668_020 Hb_000086_190 Hb_000086_190 Hb_001584_320--Hb_000086_190 Hb_006065_040 Hb_006065_040 Hb_001584_320--Hb_006065_040 Hb_010368_030 Hb_010368_030 Hb_001584_320--Hb_010368_030 Hb_029142_020 Hb_029142_020 Hb_001584_320--Hb_029142_020 Hb_014050_010 Hb_014050_010 Hb_001584_320--Hb_014050_010 Hb_000668_020--Hb_000086_190 Hb_000289_080 Hb_000289_080 Hb_000668_020--Hb_000289_080 Hb_012675_080 Hb_012675_080 Hb_000668_020--Hb_012675_080 Hb_006995_010 Hb_006995_010 Hb_000668_020--Hb_006995_010 Hb_003029_100 Hb_003029_100 Hb_000668_020--Hb_003029_100 Hb_000086_190--Hb_010368_030 Hb_000086_190--Hb_012675_080 Hb_000086_190--Hb_000289_080 Hb_000086_190--Hb_006995_010 Hb_001396_250 Hb_001396_250 Hb_000086_190--Hb_001396_250 Hb_007534_020 Hb_007534_020 Hb_006065_040--Hb_007534_020 Hb_006065_040--Hb_000668_020 Hb_006065_040--Hb_000086_190 Hb_006065_040--Hb_003029_100 Hb_015026_150 Hb_015026_150 Hb_006065_040--Hb_015026_150 Hb_175976_010 Hb_175976_010 Hb_010368_030--Hb_175976_010 Hb_000120_190 Hb_000120_190 Hb_010368_030--Hb_000120_190 Hb_010368_030--Hb_007534_020 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_166480_010 Hb_166480_010 Hb_010368_030--Hb_166480_010 Hb_029142_020--Hb_000120_190 Hb_011214_100 Hb_011214_100 Hb_029142_020--Hb_011214_100 Hb_006198_090 Hb_006198_090 Hb_029142_020--Hb_006198_090 Hb_030982_020 Hb_030982_020 Hb_029142_020--Hb_030982_020 Hb_011037_020 Hb_011037_020 Hb_029142_020--Hb_011037_020 Hb_029142_020--Hb_010368_030 Hb_014050_010--Hb_001396_250 Hb_000015_070 Hb_000015_070 Hb_014050_010--Hb_000015_070 Hb_014050_010--Hb_010368_030 Hb_002482_060 Hb_002482_060 Hb_014050_010--Hb_002482_060 Hb_014050_010--Hb_000120_190 Hb_014050_010--Hb_000086_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.856034 0 1.22903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161146 0.506305 0.209251 0.159741 0

CAGE analysis