Hb_000668_020

Information

Type -
Description -
Location Contig668: 2798-5998
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53296: 3327-6174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_020 0.0 - - -
2 Hb_000086_190 0.1169634231 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
3 Hb_000289_080 0.1507946801 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001584_320 0.1552122547 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
5 Hb_012675_080 0.1618636284 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
6 Hb_006995_010 0.1649786795 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
7 Hb_003029_100 0.1713641751 - - -
8 Hb_010368_030 0.1745848591 - - BnaA07g35570D [Brassica napus]
9 Hb_006065_040 0.1776467556 - - -
10 Hb_003656_150 0.1909002526 - - -
11 Hb_001396_250 0.2064627865 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
12 Hb_000204_020 0.2069364766 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
13 Hb_000261_360 0.2112687436 - - unknown [Lotus japonicus]
14 Hb_166480_010 0.2126792689 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
15 Hb_007534_020 0.2151788401 - - -
16 Hb_000789_150 0.2162828481 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
17 Hb_075745_010 0.2203621167 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
18 Hb_006198_090 0.2221557582 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
19 Hb_007763_050 0.225547381 - - hypothetical protein L484_012752 [Morus notabilis]
20 Hb_000120_190 0.2284110559 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]

Gene co-expression network

sample Hb_000668_020 Hb_000668_020 Hb_000086_190 Hb_000086_190 Hb_000668_020--Hb_000086_190 Hb_000289_080 Hb_000289_080 Hb_000668_020--Hb_000289_080 Hb_001584_320 Hb_001584_320 Hb_000668_020--Hb_001584_320 Hb_012675_080 Hb_012675_080 Hb_000668_020--Hb_012675_080 Hb_006995_010 Hb_006995_010 Hb_000668_020--Hb_006995_010 Hb_003029_100 Hb_003029_100 Hb_000668_020--Hb_003029_100 Hb_010368_030 Hb_010368_030 Hb_000086_190--Hb_010368_030 Hb_000086_190--Hb_012675_080 Hb_000086_190--Hb_000289_080 Hb_000086_190--Hb_006995_010 Hb_001396_250 Hb_001396_250 Hb_000086_190--Hb_001396_250 Hb_000289_080--Hb_006995_010 Hb_000289_080--Hb_003029_100 Hb_000204_020 Hb_000204_020 Hb_000289_080--Hb_000204_020 Hb_003656_150 Hb_003656_150 Hb_000289_080--Hb_003656_150 Hb_001584_320--Hb_000086_190 Hb_006065_040 Hb_006065_040 Hb_001584_320--Hb_006065_040 Hb_001584_320--Hb_010368_030 Hb_029142_020 Hb_029142_020 Hb_001584_320--Hb_029142_020 Hb_014050_010 Hb_014050_010 Hb_001584_320--Hb_014050_010 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_012675_080--Hb_001396_250 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_006995_010--Hb_003656_150 Hb_006995_010--Hb_003029_100 Hb_006198_090 Hb_006198_090 Hb_006995_010--Hb_006198_090 Hb_003029_100--Hb_003656_150 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_003029_100--Hb_006198_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36719 0 0 41.6422 4.28842 66.5384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.38504 22.3077 5.39496 5.39317 0

CAGE analysis