Hb_011037_020

Information

Type -
Description -
Location Contig11037: 26136-33965
Sequence    

Annotation

kegg
ID atr:s00066p00180460
description AMTR_s00066p00180460; hypothetical protein
nr
ID ABR18009.1
description unknown [Picea sitchensis]
swissprot
ID -
description -
trembl
ID B8LQS9
description Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1
Gene Ontology
ID GO:0003677
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03227: 23452-54818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011037_020 0.0 - - unknown [Picea sitchensis]
2 Hb_025288_010 0.1305001027 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
3 Hb_000671_120 0.1307484516 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
4 Hb_011214_100 0.1314012435 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
5 Hb_012675_080 0.1467757169 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
6 Hb_000125_020 0.1469710718 transcription factor TF Family: mTERF -
7 Hb_011512_050 0.1509604222 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
8 Hb_001396_250 0.1526695898 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
9 Hb_132180_010 0.1573848884 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
10 Hb_000015_070 0.1575067271 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
11 Hb_089202_010 0.162571218 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
12 Hb_029142_020 0.163535954 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
13 Hb_002078_500 0.1668654915 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004669_030 0.1694887063 - - -
15 Hb_000342_160 0.1698599556 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
16 Hb_007763_050 0.1712435561 - - hypothetical protein L484_012752 [Morus notabilis]
17 Hb_001579_260 0.171744672 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
18 Hb_002078_260 0.1719039066 - - unknown [Populus trichocarpa]
19 Hb_001969_020 0.1754284504 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
20 Hb_099298_010 0.1763873953 - - -

Gene co-expression network

sample Hb_011037_020 Hb_011037_020 Hb_025288_010 Hb_025288_010 Hb_011037_020--Hb_025288_010 Hb_000671_120 Hb_000671_120 Hb_011037_020--Hb_000671_120 Hb_011214_100 Hb_011214_100 Hb_011037_020--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_011037_020--Hb_012675_080 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050 Hb_132180_010 Hb_132180_010 Hb_025288_010--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_025288_010--Hb_002078_260 Hb_029142_070 Hb_029142_070 Hb_025288_010--Hb_029142_070 Hb_030982_020 Hb_030982_020 Hb_025288_010--Hb_030982_020 Hb_025288_010--Hb_011214_100 Hb_004669_030 Hb_004669_030 Hb_000671_120--Hb_004669_030 Hb_000671_120--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_000671_120--Hb_001220_010 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_001233_020 Hb_001233_020 Hb_000671_120--Hb_001233_020 Hb_001396_250 Hb_001396_250 Hb_011214_100--Hb_001396_250 Hb_011214_100--Hb_030982_020 Hb_011214_100--Hb_132180_010 Hb_011214_100--Hb_002078_260 Hb_000015_070 Hb_000015_070 Hb_011214_100--Hb_000015_070 Hb_011214_100--Hb_000342_160 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_012675_080--Hb_000015_070 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_000481_050 Hb_000481_050 Hb_000125_020--Hb_000481_050 Hb_002562_110 Hb_002562_110 Hb_000125_020--Hb_002562_110 Hb_000125_020--Hb_004669_030 Hb_000125_020--Hb_132180_010 Hb_000125_020--Hb_000671_120 Hb_000016_060 Hb_000016_060 Hb_000125_020--Hb_000016_060 Hb_011512_050--Hb_002078_260 Hb_001163_040 Hb_001163_040 Hb_011512_050--Hb_001163_040 Hb_000240_120 Hb_000240_120 Hb_011512_050--Hb_000240_120 Hb_000240_100 Hb_000240_100 Hb_011512_050--Hb_000240_100 Hb_011512_050--Hb_132180_010 Hb_011512_050--Hb_011214_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48038 2.30157 3.25501 82.2883 2.93203 55.2105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9165 24.8467 16.6027 7.51165 8.0554

CAGE analysis