Hb_001163_040

Information

Type -
Description -
Location Contig1163: 45838-46657
Sequence    

Annotation

kegg
ID tcc:TCM_041483
description Cytochrome-c oxidases,electron carriers
nr
ID XP_007015915.1
description Cytochrome-c oxidases,electron carriers [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GZS3
description Cytochrome-c oxidases,electron carriers OS=Theobroma cacao GN=TCM_041483 PE=4 SV=1
Gene Ontology
ID GO:0005746
description cytochrome-c carriers

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05017: 45789-47653 , PASA_asmbl_05018: 45814-47667 , PASA_asmbl_05019: 45814-47667 , PASA_asmbl_05021: 45937-47667 , PASA_asmbl_05022: 45937-47667
cDNA
(Sanger)
(ID:Location)		 005_G07.ab1: 45789-47616

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_040 0.0 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
2 Hb_011512_050 0.1208528915 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
3 Hb_002078_260 0.1271547507 - - unknown [Populus trichocarpa]
4 Hb_001220_010 0.1298889061 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
5 Hb_006452_110 0.1299223737 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
6 Hb_007894_230 0.1307901735 - - 30S ribosomal protein S14, putative [Ricinus communis]
7 Hb_080601_020 0.131102447 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
8 Hb_000733_080 0.1353218401 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
9 Hb_000671_120 0.1383491689 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
10 Hb_000240_120 0.1400125008 - - ras-related protein Rab-5B [Reticulomyxa filosa]
11 Hb_000340_520 0.1466745065 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
12 Hb_132180_010 0.1502082268 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
13 Hb_001233_020 0.1549523592 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
14 Hb_001969_020 0.1552364668 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
15 Hb_004669_030 0.1599581726 - - -
16 Hb_001205_160 0.1600655275 - - hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
17 Hb_000342_160 0.1621266855 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
18 Hb_001252_210 0.1648266609 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
19 Hb_175933_010 0.1679326043 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
20 Hb_029142_070 0.1684531039 - - -

Gene co-expression network

sample Hb_001163_040 Hb_001163_040 Hb_011512_050 Hb_011512_050 Hb_001163_040--Hb_011512_050 Hb_002078_260 Hb_002078_260 Hb_001163_040--Hb_002078_260 Hb_001220_010 Hb_001220_010 Hb_001163_040--Hb_001220_010 Hb_006452_110 Hb_006452_110 Hb_001163_040--Hb_006452_110 Hb_007894_230 Hb_007894_230 Hb_001163_040--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_001163_040--Hb_080601_020 Hb_011512_050--Hb_002078_260 Hb_000240_120 Hb_000240_120 Hb_011512_050--Hb_000240_120 Hb_000240_100 Hb_000240_100 Hb_011512_050--Hb_000240_100 Hb_132180_010 Hb_132180_010 Hb_011512_050--Hb_132180_010 Hb_011214_100 Hb_011214_100 Hb_011512_050--Hb_011214_100 Hb_002078_260--Hb_007894_230 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_001220_010--Hb_080601_020 Hb_001233_020 Hb_001233_020 Hb_001220_010--Hb_001233_020 Hb_001220_010--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_001220_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_001220_010--Hb_004669_030 Hb_001220_010--Hb_007894_230 Hb_000733_080 Hb_000733_080 Hb_006452_110--Hb_000733_080 Hb_003894_080 Hb_003894_080 Hb_006452_110--Hb_003894_080 Hb_000130_100 Hb_000130_100 Hb_006452_110--Hb_000130_100 Hb_005000_330 Hb_005000_330 Hb_006452_110--Hb_005000_330 Hb_012340_050 Hb_012340_050 Hb_006452_110--Hb_012340_050 Hb_007894_230--Hb_080601_020 Hb_001935_150 Hb_001935_150 Hb_007894_230--Hb_001935_150 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_007894_230--Hb_005694_020 Hb_000710_070 Hb_000710_070 Hb_080601_020--Hb_000710_070 Hb_080601_020--Hb_002078_260 Hb_016604_030 Hb_016604_030 Hb_080601_020--Hb_016604_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.32697 1.06729 1.92988 37.2936 3.20187 13.4627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2721 21.9285 12.4708 4.24126 5.6302

CAGE analysis