Hb_001571_110

Information

Type -
Description -
Location Contig1571: 133662-134849
Sequence    

Annotation

kegg
ID vvi:100261906
description 60S ribosomal protein L44
nr
ID XP_012479828.1
description PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
swissprot
ID Q96499
description 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3
trembl
ID A0A0D2TWL3
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G070100 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13725: 133372-134916
cDNA
(Sanger)
(ID:Location)		 002_O17.ab1: 133372-134916 , 003_H10.ab1: 134759-134916 , 037_P19.ab1: 133372-134916

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_110 0.0 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
2 Hb_007894_230 0.1125022478 - - 30S ribosomal protein S14, putative [Ricinus communis]
3 Hb_000097_010 0.1180272193 - - -
4 Hb_014834_040 0.1252374374 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
5 Hb_140543_010 0.1366864194 - - -
6 Hb_002078_260 0.1425666114 - - unknown [Populus trichocarpa]
7 Hb_001935_150 0.1458988549 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
8 Hb_080601_020 0.1461468262 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
9 Hb_001754_070 0.1488099988 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
10 Hb_172706_030 0.1516539851 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
11 Hb_001635_130 0.1551574926 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
12 Hb_001301_050 0.1586897074 - - -
13 Hb_001220_010 0.1643757744 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
14 Hb_000326_090 0.1677840345 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
15 Hb_000049_060 0.1684829457 - - unknown [Medicago truncatula]
16 Hb_005694_020 0.1701418264 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
17 Hb_029142_070 0.1713878499 - - -
18 Hb_042710_010 0.1737592861 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
19 Hb_082006_010 0.174415305 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004602_030 0.1754354324 - - histone H4 [Zea mays]

Gene co-expression network

sample Hb_001571_110 Hb_001571_110 Hb_007894_230 Hb_007894_230 Hb_001571_110--Hb_007894_230 Hb_000097_010 Hb_000097_010 Hb_001571_110--Hb_000097_010 Hb_014834_040 Hb_014834_040 Hb_001571_110--Hb_014834_040 Hb_140543_010 Hb_140543_010 Hb_001571_110--Hb_140543_010 Hb_002078_260 Hb_002078_260 Hb_001571_110--Hb_002078_260 Hb_001935_150 Hb_001935_150 Hb_001571_110--Hb_001935_150 Hb_007894_230--Hb_002078_260 Hb_080601_020 Hb_080601_020 Hb_007894_230--Hb_080601_020 Hb_007894_230--Hb_001935_150 Hb_001220_010 Hb_001220_010 Hb_007894_230--Hb_001220_010 Hb_005694_020 Hb_005694_020 Hb_007894_230--Hb_005694_020 Hb_011644_010 Hb_011644_010 Hb_000097_010--Hb_011644_010 Hb_000097_010--Hb_140543_010 Hb_006541_020 Hb_006541_020 Hb_000097_010--Hb_006541_020 Hb_172706_030 Hb_172706_030 Hb_000097_010--Hb_172706_030 Hb_000025_240 Hb_000025_240 Hb_000097_010--Hb_000025_240 Hb_042710_010 Hb_042710_010 Hb_014834_040--Hb_042710_010 Hb_098852_010 Hb_098852_010 Hb_014834_040--Hb_098852_010 Hb_132180_010 Hb_132180_010 Hb_014834_040--Hb_132180_010 Hb_020035_020 Hb_020035_020 Hb_014834_040--Hb_020035_020 Hb_006995_040 Hb_006995_040 Hb_014834_040--Hb_006995_040 Hb_001754_070 Hb_001754_070 Hb_140543_010--Hb_001754_070 Hb_140543_010--Hb_172706_030 Hb_130235_010 Hb_130235_010 Hb_140543_010--Hb_130235_010 Hb_000656_340 Hb_000656_340 Hb_140543_010--Hb_000656_340 Hb_000086_550 Hb_000086_550 Hb_140543_010--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_140543_010--Hb_005357_130 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_014834_030 Hb_014834_030 Hb_001935_150--Hb_014834_030 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.5985 13.7763 56.9662 323.383 28.4403 406.915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
266.24 573.647 109.116 154.419 112.97

CAGE analysis