Hb_042710_010

Information

Type -
Description -
Location Contig42710: 597-1001
Sequence    

Annotation

kegg
ID rcu:RCOM_0465830
description 30S ribosomal protein S8, putative
nr
ID XP_012081549.1
description PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
swissprot
ID P42798
description 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2
trembl
ID I3NML3
description 40S ribosomal protein S15C OS=Hevea brasiliensis GN=RPS15C PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s15a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042710_010 0.0 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
2 Hb_001296_030 0.0860404228 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
3 Hb_000419_130 0.1134852304 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
4 Hb_020035_020 0.1224377169 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
5 Hb_000493_010 0.1269325149 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
6 Hb_007594_090 0.1338619756 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
7 Hb_001610_130 0.1345697271 - - 40S ribosomal protein S30 [Medicago truncatula]
8 Hb_075359_010 0.1367044215 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_187083_010 0.1370323926 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
10 Hb_000672_120 0.1378653551 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
11 Hb_000648_030 0.1382579331 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
12 Hb_001935_150 0.1385948504 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
13 Hb_014834_040 0.1419366709 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
14 Hb_008841_010 0.1423062168 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
15 Hb_172706_030 0.1430332898 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
16 Hb_002843_210 0.1433362374 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
17 Hb_014834_030 0.1437787487 - - -
18 Hb_003561_030 0.1459644991 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
19 Hb_000025_240 0.1490738753 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
20 Hb_006541_020 0.1512635851 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_042710_010 Hb_042710_010 Hb_001296_030 Hb_001296_030 Hb_042710_010--Hb_001296_030 Hb_000419_130 Hb_000419_130 Hb_042710_010--Hb_000419_130 Hb_020035_020 Hb_020035_020 Hb_042710_010--Hb_020035_020 Hb_000493_010 Hb_000493_010 Hb_042710_010--Hb_000493_010 Hb_007594_090 Hb_007594_090 Hb_042710_010--Hb_007594_090 Hb_001610_130 Hb_001610_130 Hb_042710_010--Hb_001610_130 Hb_008841_010 Hb_008841_010 Hb_001296_030--Hb_008841_010 Hb_001296_030--Hb_000493_010 Hb_001296_030--Hb_000419_130 Hb_075359_010 Hb_075359_010 Hb_001296_030--Hb_075359_010 Hb_000025_240 Hb_000025_240 Hb_001296_030--Hb_000025_240 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_000419_130--Hb_001610_130 Hb_003058_220 Hb_003058_220 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070 Hb_000656_340 Hb_000656_340 Hb_020035_020--Hb_000656_340 Hb_006995_040 Hb_006995_040 Hb_020035_020--Hb_006995_040 Hb_020035_020--Hb_001610_130 Hb_020035_020--Hb_000419_130 Hb_020035_020--Hb_000493_010 Hb_000648_030 Hb_000648_030 Hb_000493_010--Hb_000648_030 Hb_000672_120 Hb_000672_120 Hb_000493_010--Hb_000672_120 Hb_000493_010--Hb_000419_130 Hb_007317_060 Hb_007317_060 Hb_000493_010--Hb_007317_060 Hb_002539_090 Hb_002539_090 Hb_007594_090--Hb_002539_090 Hb_007594_090--Hb_000672_120 Hb_000975_110 Hb_000975_110 Hb_007594_090--Hb_000975_110 Hb_004336_050 Hb_004336_050 Hb_007594_090--Hb_004336_050 Hb_000751_130 Hb_000751_130 Hb_007594_090--Hb_000751_130 Hb_003561_030 Hb_003561_030 Hb_007594_090--Hb_003561_030 Hb_001575_030 Hb_001575_030 Hb_001610_130--Hb_001575_030 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_003226_220 Hb_003226_220 Hb_001610_130--Hb_003226_220 Hb_014834_140 Hb_014834_140 Hb_001610_130--Hb_014834_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
351.124 108.581 136.698 1335.31 234.353 2671.06
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2353.12 3253.03 1479.88 958.77 150.3

CAGE analysis