Hb_008841_010

Information

Type -
Description -
Location Contig8841: 3571-7390
Sequence    

Annotation

kegg
ID pmum:103323653
description uncharacterized LOC103323653
nr
ID XP_008223881.1
description PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
swissprot
ID -
description -
trembl
ID B9HAZ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07530g PE=4 SV=1
Gene Ontology
ID GO:0005753
description fiber protein fb15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61470: 3613-7364 , PASA_asmbl_61471: 4469-4870
cDNA
(Sanger)
(ID:Location)		 019_H03.ab1: 3693-7266 , 020_K03.ab1: 3696-7218 , 024_L06.ab1: 3613-7262 , 037_N03.ab1: 3691-7266 , 043_J06.ab1: 3705-7324 , 043_N16.ab1: 3693-7266 , 052_N18.ab1: 3696-7266

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008841_010 0.0 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
2 Hb_001296_030 0.1142216428 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
3 Hb_002025_300 0.1294888688 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
4 Hb_042710_010 0.1423062168 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
5 Hb_007594_090 0.1505989222 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
6 Hb_000672_120 0.1512742161 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
7 Hb_000493_010 0.1617840209 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
8 Hb_000648_020 0.1622100414 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
9 Hb_001008_010 0.1631564581 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
10 Hb_001579_310 0.1636364745 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
11 Hb_001427_230 0.1665946566 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009372_030 0.1676530378 - - 50S ribosomal protein L6, putative [Ricinus communis]
13 Hb_007520_060 0.1676767181 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
14 Hb_006718_010 0.1685158395 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
15 Hb_075359_010 0.1708686636 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
16 Hb_002843_210 0.1726623488 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
17 Hb_000313_010 0.1740026079 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_001629_100 0.1762293373 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
19 Hb_002539_090 0.1769148994 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
20 Hb_001623_430 0.1799753442 - - PREDICTED: small acidic protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_008841_010 Hb_008841_010 Hb_001296_030 Hb_001296_030 Hb_008841_010--Hb_001296_030 Hb_002025_300 Hb_002025_300 Hb_008841_010--Hb_002025_300 Hb_042710_010 Hb_042710_010 Hb_008841_010--Hb_042710_010 Hb_007594_090 Hb_007594_090 Hb_008841_010--Hb_007594_090 Hb_000672_120 Hb_000672_120 Hb_008841_010--Hb_000672_120 Hb_000493_010 Hb_000493_010 Hb_008841_010--Hb_000493_010 Hb_001296_030--Hb_042710_010 Hb_001296_030--Hb_000493_010 Hb_000419_130 Hb_000419_130 Hb_001296_030--Hb_000419_130 Hb_075359_010 Hb_075359_010 Hb_001296_030--Hb_075359_010 Hb_000025_240 Hb_000025_240 Hb_001296_030--Hb_000025_240 Hb_000648_020 Hb_000648_020 Hb_002025_300--Hb_000648_020 Hb_006718_010 Hb_006718_010 Hb_002025_300--Hb_006718_010 Hb_005914_200 Hb_005914_200 Hb_002025_300--Hb_005914_200 Hb_002843_210 Hb_002843_210 Hb_002025_300--Hb_002843_210 Hb_012539_020 Hb_012539_020 Hb_002025_300--Hb_012539_020 Hb_002025_300--Hb_000025_240 Hb_042710_010--Hb_000419_130 Hb_020035_020 Hb_020035_020 Hb_042710_010--Hb_020035_020 Hb_042710_010--Hb_000493_010 Hb_042710_010--Hb_007594_090 Hb_001610_130 Hb_001610_130 Hb_042710_010--Hb_001610_130 Hb_002539_090 Hb_002539_090 Hb_007594_090--Hb_002539_090 Hb_007594_090--Hb_000672_120 Hb_000975_110 Hb_000975_110 Hb_007594_090--Hb_000975_110 Hb_004336_050 Hb_004336_050 Hb_007594_090--Hb_004336_050 Hb_000751_130 Hb_000751_130 Hb_007594_090--Hb_000751_130 Hb_003561_030 Hb_003561_030 Hb_007594_090--Hb_003561_030 Hb_000672_120--Hb_004336_050 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_005588_070 Hb_005588_070 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090 Hb_000648_030 Hb_000648_030 Hb_000493_010--Hb_000648_030 Hb_000493_010--Hb_000672_120 Hb_000493_010--Hb_000419_130 Hb_007317_060 Hb_007317_060 Hb_000493_010--Hb_007317_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.5643 7.77998 28.3523 396.354 121.148 1306.63
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1577.45 1385.01 1269.55 519.582 120.756

CAGE analysis