Hb_001296_030

Information

Type -
Description -
Location Contig1296: 10964-11457
Sequence    

Annotation

kegg
ID rcu:RCOM_1028680
description hypothetical protein
nr
ID XP_012077459.1
description PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LAZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17253 PE=4 SV=1
Gene Ontology
ID GO:0009536
description zinc finger and btb domain-containing protein 11 isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08853: 11275-11506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001296_030 0.0 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
2 Hb_042710_010 0.0860404228 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
3 Hb_008841_010 0.1142216428 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
4 Hb_000493_010 0.1293008974 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
5 Hb_000419_130 0.1430363321 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
6 Hb_075359_010 0.1455822129 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
7 Hb_000025_240 0.1492134698 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
8 Hb_006541_020 0.1507919358 - - unknown [Lotus japonicus]
9 Hb_007520_060 0.152379961 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
10 Hb_009372_030 0.1565872333 - - 50S ribosomal protein L6, putative [Ricinus communis]
11 Hb_012305_120 0.159749785 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
12 Hb_002025_300 0.1603207568 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
13 Hb_000672_120 0.165657162 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
14 Hb_006718_010 0.1677997218 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
15 Hb_000648_030 0.1683892606 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
16 Hb_020035_020 0.1693601419 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
17 Hb_007594_090 0.170003169 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
18 Hb_001935_150 0.170743764 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
19 Hb_001610_130 0.1730351425 - - 40S ribosomal protein S30 [Medicago truncatula]
20 Hb_002843_210 0.175310702 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]

Gene co-expression network

sample Hb_001296_030 Hb_001296_030 Hb_042710_010 Hb_042710_010 Hb_001296_030--Hb_042710_010 Hb_008841_010 Hb_008841_010 Hb_001296_030--Hb_008841_010 Hb_000493_010 Hb_000493_010 Hb_001296_030--Hb_000493_010 Hb_000419_130 Hb_000419_130 Hb_001296_030--Hb_000419_130 Hb_075359_010 Hb_075359_010 Hb_001296_030--Hb_075359_010 Hb_000025_240 Hb_000025_240 Hb_001296_030--Hb_000025_240 Hb_042710_010--Hb_000419_130 Hb_020035_020 Hb_020035_020 Hb_042710_010--Hb_020035_020 Hb_042710_010--Hb_000493_010 Hb_007594_090 Hb_007594_090 Hb_042710_010--Hb_007594_090 Hb_001610_130 Hb_001610_130 Hb_042710_010--Hb_001610_130 Hb_002025_300 Hb_002025_300 Hb_008841_010--Hb_002025_300 Hb_008841_010--Hb_042710_010 Hb_008841_010--Hb_007594_090 Hb_000672_120 Hb_000672_120 Hb_008841_010--Hb_000672_120 Hb_008841_010--Hb_000493_010 Hb_000648_030 Hb_000648_030 Hb_000493_010--Hb_000648_030 Hb_000493_010--Hb_000672_120 Hb_000493_010--Hb_000419_130 Hb_007317_060 Hb_007317_060 Hb_000493_010--Hb_007317_060 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_000419_130--Hb_001610_130 Hb_003058_220 Hb_003058_220 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070 Hb_002843_210 Hb_002843_210 Hb_075359_010--Hb_002843_210 Hb_001935_150 Hb_001935_150 Hb_075359_010--Hb_001935_150 Hb_075359_010--Hb_042710_010 Hb_075359_010--Hb_000025_240 Hb_004333_030 Hb_004333_030 Hb_075359_010--Hb_004333_030 Hb_187083_010 Hb_187083_010 Hb_075359_010--Hb_187083_010 Hb_006541_020 Hb_006541_020 Hb_000025_240--Hb_006541_020 Hb_008748_020 Hb_008748_020 Hb_000025_240--Hb_008748_020 Hb_005914_200 Hb_005914_200 Hb_000025_240--Hb_005914_200 Hb_006718_010 Hb_006718_010 Hb_000025_240--Hb_006718_010 Hb_014834_030 Hb_014834_030 Hb_000025_240--Hb_014834_030 Hb_000025_240--Hb_002025_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.08182 1.42334 1.83401 26.734 4.07342 82.2256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.7623 98.6068 44.37 27.5168 6.70864

CAGE analysis