Hb_001610_130

Information

Type -
Description -
Location Contig1610: 114550-116145
Sequence    

Annotation

kegg
ID mtr:MTR_5g012610
description 40S ribosomal protein S30
nr
ID XP_003608708.1
description 40S ribosomal protein S30 [Medicago truncatula]
swissprot
ID P49689
description 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=3 SV=3
trembl
ID W5I512
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14451: 114343-115531
cDNA
(Sanger)
(ID:Location)		 001_D13.ab1: 114497-115530 , 001_L13.ab1: 114343-115531 , 004_D02.ab1: 114497-115530 , 004_F08.ab1: 114443-115531 , 011_B02.ab1: 114497-115530 , 011_F22.ab1: 114497-115537 , 011_N08.ab1: 114497-114681 , 012_H12.ab1: 114438-115487 , 023_M14.ab1: 115252-115530 , 024_C16.ab1: 114732-115533 , 027_E07.ab1: 115250-115537 , 028_H19.ab1: 114582-115531 , 034_B17.ab1: 114443-115531 , 039_L06.ab1: 114388-115531 , 042_D10.ab1: 114345-115531

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001610_130 0.0 - - 40S ribosomal protein S30 [Medicago truncatula]
2 Hb_000419_130 0.0865274063 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
3 Hb_001575_030 0.0883785086 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
4 Hb_003058_220 0.1048751965 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
5 Hb_005224_050 0.1201824002 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
6 Hb_003226_220 0.1264113826 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
7 Hb_014834_140 0.1276214566 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
8 Hb_015978_070 0.1285259314 - - -
9 Hb_001769_100 0.1341704056 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
10 Hb_042710_010 0.1345697271 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
11 Hb_000199_070 0.1353336868 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004807_060 0.1392041903 - - -
13 Hb_001571_090 0.1404600911 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
14 Hb_000645_190 0.1411143962 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
15 Hb_000656_340 0.1442704672 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
16 Hb_007441_270 0.145163794 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
17 Hb_001057_050 0.1457012333 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
18 Hb_140543_010 0.1465626854 - - -
19 Hb_008847_020 0.1479148811 - - 40S ribosomal protein S17C [Hevea brasiliensis]
20 Hb_020035_020 0.1481107671 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]

Gene co-expression network

sample Hb_001610_130 Hb_001610_130 Hb_000419_130 Hb_000419_130 Hb_001610_130--Hb_000419_130 Hb_001575_030 Hb_001575_030 Hb_001610_130--Hb_001575_030 Hb_003058_220 Hb_003058_220 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_003226_220 Hb_003226_220 Hb_001610_130--Hb_003226_220 Hb_014834_140 Hb_014834_140 Hb_001610_130--Hb_014834_140 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070 Hb_001575_030--Hb_003226_220 Hb_015978_070 Hb_015978_070 Hb_001575_030--Hb_015978_070 Hb_001571_090 Hb_001571_090 Hb_001575_030--Hb_001571_090 Hb_002232_470 Hb_002232_470 Hb_001575_030--Hb_002232_470 Hb_001575_030--Hb_000419_130 Hb_003058_220--Hb_000199_070 Hb_003058_220--Hb_005224_050 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000645_190 Hb_000645_190 Hb_003058_220--Hb_000645_190 Hb_017711_010 Hb_017711_010 Hb_005224_050--Hb_017711_010 Hb_000193_350 Hb_000193_350 Hb_005224_050--Hb_000193_350 Hb_005224_050--Hb_000199_070 Hb_003687_020 Hb_003687_020 Hb_005224_050--Hb_003687_020 Hb_002293_030 Hb_002293_030 Hb_005224_050--Hb_002293_030 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_003226_220--Hb_001571_090 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003988_040 Hb_003988_040 Hb_003226_220--Hb_003988_040 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_003405_060 Hb_003405_060 Hb_014834_140--Hb_003405_060 Hb_086703_010 Hb_086703_010 Hb_014834_140--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_014834_140--Hb_004807_060 Hb_003043_070 Hb_003043_070 Hb_014834_140--Hb_003043_070 Hb_001057_050 Hb_001057_050 Hb_014834_140--Hb_001057_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
322.007 78.495 127.965 554.814 257.233 1528.77
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1323.13 2386.7 399.348 392.309 64.5144

CAGE analysis