Hb_001085_010

Information

Type -
Description -
Location Contig1085: 5090-15115
Sequence    

Annotation

kegg
ID rcu:RCOM_1018440
description arp2/3 complex 20 kD subunit, putative
nr
ID XP_011041940.1
description PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
swissprot
ID F4JUL9
description Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana GN=ARPC4 PE=1 SV=1
trembl
ID M4EVD0
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra032763 PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-related protein 2 3 complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02546: 12170-15115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_010 0.0 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
2 Hb_011161_050 0.083172324 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
3 Hb_000820_130 0.1031127471 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
4 Hb_003561_030 0.1055882633 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
5 Hb_000419_130 0.1064237835 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
6 Hb_000364_020 0.1079434186 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
7 Hb_000212_470 0.1108666602 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
8 Hb_000086_550 0.1132795981 - - Os02g0814700 [Oryza sativa Japonica Group]
9 Hb_010810_020 0.1158026466 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
10 Hb_187083_010 0.1182111939 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
11 Hb_000722_040 0.1182220283 - - -
12 Hb_010172_030 0.1183519883 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
13 Hb_014834_030 0.1190125265 - - -
14 Hb_003226_220 0.1195684183 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
15 Hb_001769_100 0.1199006366 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
16 Hb_000367_210 0.1220084198 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
17 Hb_010812_010 0.1233910909 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
18 Hb_000163_130 0.1238091321 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
19 Hb_000975_110 0.124008354 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
20 Hb_002835_320 0.12432745 - - 60S ribosomal protein L27B [Hevea brasiliensis]

Gene co-expression network

sample Hb_001085_010 Hb_001085_010 Hb_011161_050 Hb_011161_050 Hb_001085_010--Hb_011161_050 Hb_000820_130 Hb_000820_130 Hb_001085_010--Hb_000820_130 Hb_003561_030 Hb_003561_030 Hb_001085_010--Hb_003561_030 Hb_000419_130 Hb_000419_130 Hb_001085_010--Hb_000419_130 Hb_000364_020 Hb_000364_020 Hb_001085_010--Hb_000364_020 Hb_000212_470 Hb_000212_470 Hb_001085_010--Hb_000212_470 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_000975_110 Hb_000975_110 Hb_011161_050--Hb_000975_110 Hb_011161_050--Hb_003561_030 Hb_011161_050--Hb_000364_020 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_000722_040 Hb_000722_040 Hb_003561_030--Hb_000722_040 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_003561_030--Hb_000975_110 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_001610_130 Hb_001610_130 Hb_000419_130--Hb_001610_130 Hb_003058_220 Hb_003058_220 Hb_000419_130--Hb_003058_220 Hb_000419_130--Hb_011161_050 Hb_000419_130--Hb_000199_070 Hb_000364_020--Hb_000086_550 Hb_000283_110 Hb_000283_110 Hb_000364_020--Hb_000283_110 Hb_004336_050 Hb_004336_050 Hb_000364_020--Hb_004336_050 Hb_000364_020--Hb_000975_110 Hb_000751_130 Hb_000751_130 Hb_000364_020--Hb_000751_130 Hb_008847_020 Hb_008847_020 Hb_000212_470--Hb_008847_020 Hb_003226_220 Hb_003226_220 Hb_000212_470--Hb_003226_220 Hb_000212_470--Hb_000820_130 Hb_010883_150 Hb_010883_150 Hb_000212_470--Hb_010883_150 Hb_002835_320 Hb_002835_320 Hb_000212_470--Hb_002835_320 Hb_000236_460 Hb_000236_460 Hb_000212_470--Hb_000236_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.818761 0.292588 0.118579 1.63303 1.08902 2.04157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.12634 4.932 1.60505 0.837038 0.504322

CAGE analysis