Hb_000493_010

Information

Type -
Description -
Location Contig493: 23695-25075
Sequence    

Annotation

kegg
ID cic:CICLE_v10021431mg
description hypothetical protein
nr
ID XP_006442080.1
description hypothetical protein CICLE_v10021431mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067DQ63
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022524mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45357: 23691-24291 , PASA_asmbl_45358: 23841-25050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000493_010 0.0 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
2 Hb_000648_030 0.1081496378 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
3 Hb_042710_010 0.1269325149 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_001296_030 0.1293008974 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
5 Hb_000672_120 0.1389217623 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
6 Hb_000419_130 0.1406624973 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
7 Hb_007317_060 0.1473706341 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
8 Hb_007594_090 0.1478404106 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
9 Hb_002259_150 0.1496082023 - - BnaC04g40780D [Brassica napus]
10 Hb_012675_070 0.1523846173 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
11 Hb_020035_020 0.1528340924 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
12 Hb_175976_010 0.1543578293 - - -
13 Hb_172706_030 0.1596634066 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
14 Hb_008841_010 0.1617840209 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
15 Hb_005400_030 0.1631932483 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
16 Hb_007532_040 0.1634986768 - - -
17 Hb_000049_060 0.1654954416 - - unknown [Medicago truncatula]
18 Hb_100777_010 0.1675722815 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
19 Hb_002482_040 0.1684409846 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
20 Hb_004336_050 0.1688898206 - - hypothetical protein JCGZ_26651 [Jatropha curcas]

Gene co-expression network

sample Hb_000493_010 Hb_000493_010 Hb_000648_030 Hb_000648_030 Hb_000493_010--Hb_000648_030 Hb_042710_010 Hb_042710_010 Hb_000493_010--Hb_042710_010 Hb_001296_030 Hb_001296_030 Hb_000493_010--Hb_001296_030 Hb_000672_120 Hb_000672_120 Hb_000493_010--Hb_000672_120 Hb_000419_130 Hb_000419_130 Hb_000493_010--Hb_000419_130 Hb_007317_060 Hb_007317_060 Hb_000493_010--Hb_007317_060 Hb_000648_030--Hb_007317_060 Hb_067776_010 Hb_067776_010 Hb_000648_030--Hb_067776_010 Hb_000380_010 Hb_000380_010 Hb_000648_030--Hb_000380_010 Hb_012675_070 Hb_012675_070 Hb_000648_030--Hb_012675_070 Hb_002259_150 Hb_002259_150 Hb_000648_030--Hb_002259_150 Hb_042710_010--Hb_001296_030 Hb_042710_010--Hb_000419_130 Hb_020035_020 Hb_020035_020 Hb_042710_010--Hb_020035_020 Hb_007594_090 Hb_007594_090 Hb_042710_010--Hb_007594_090 Hb_001610_130 Hb_001610_130 Hb_042710_010--Hb_001610_130 Hb_008841_010 Hb_008841_010 Hb_001296_030--Hb_008841_010 Hb_001296_030--Hb_000419_130 Hb_075359_010 Hb_075359_010 Hb_001296_030--Hb_075359_010 Hb_000025_240 Hb_000025_240 Hb_001296_030--Hb_000025_240 Hb_004336_050 Hb_004336_050 Hb_000672_120--Hb_004336_050 Hb_000672_120--Hb_007594_090 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_005588_070 Hb_005588_070 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_000419_130--Hb_001610_130 Hb_003058_220 Hb_003058_220 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070 Hb_007317_060--Hb_000380_010 Hb_007317_060--Hb_002259_150 Hb_008173_120 Hb_008173_120 Hb_007317_060--Hb_008173_120 Hb_000684_230 Hb_000684_230 Hb_007317_060--Hb_000684_230 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.188252 0.096904 0.174089 0.640918 0.170341 2.46972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86183 1.77768 0.946738 0.444249 0.315214

CAGE analysis