Hb_011644_010

Information

Type -
Description -
Location Contig11644: 12145-13482
Sequence    

Annotation

kegg
ID ero:EROM_101490
description choline phosphate cytidylyltransferase
nr
ID XP_010911504.1
description PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
swissprot
ID O74975
description Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.02c PE=1 SV=3
trembl
ID A0A0A1NBK2
description Putative Choline-phosphate cytidylyltransferase OS=Rhizopus microsporus GN=RMCBS344292_03521 PE=4 SV=1
Gene Ontology
ID GO:0004105
description choline-phosphate cytidylyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05095: 13278-24653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011644_010 0.0 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
2 Hb_000097_010 0.1243530062 - - -
3 Hb_135940_010 0.1580673008 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
4 Hb_001017_060 0.1662768667 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_029142_070 0.1669128828 - - -
6 Hb_000656_340 0.1674065028 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
7 Hb_014834_040 0.1677826064 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
8 Hb_002284_050 0.1712571081 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
9 Hb_001571_110 0.1788531168 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
10 Hb_140543_010 0.1790446739 - - -
11 Hb_006995_040 0.1799329288 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
12 Hb_172706_030 0.181059378 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
13 Hb_001935_150 0.1838872694 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
14 Hb_000641_020 0.185636109 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
15 Hb_000367_030 0.1864124432 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
16 Hb_021596_080 0.1866047583 - - 50S ribosomal protein L33A [Hevea brasiliensis]
17 Hb_042710_010 0.1883340326 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
18 Hb_000215_200 0.1887629564 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
19 Hb_007894_230 0.1903962465 - - 30S ribosomal protein S14, putative [Ricinus communis]
20 Hb_041205_010 0.191064495 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011644_010 Hb_011644_010 Hb_000097_010 Hb_000097_010 Hb_011644_010--Hb_000097_010 Hb_135940_010 Hb_135940_010 Hb_011644_010--Hb_135940_010 Hb_001017_060 Hb_001017_060 Hb_011644_010--Hb_001017_060 Hb_029142_070 Hb_029142_070 Hb_011644_010--Hb_029142_070 Hb_000656_340 Hb_000656_340 Hb_011644_010--Hb_000656_340 Hb_014834_040 Hb_014834_040 Hb_011644_010--Hb_014834_040 Hb_001571_110 Hb_001571_110 Hb_000097_010--Hb_001571_110 Hb_140543_010 Hb_140543_010 Hb_000097_010--Hb_140543_010 Hb_006541_020 Hb_006541_020 Hb_000097_010--Hb_006541_020 Hb_172706_030 Hb_172706_030 Hb_000097_010--Hb_172706_030 Hb_000025_240 Hb_000025_240 Hb_000097_010--Hb_000025_240 Hb_021596_080 Hb_021596_080 Hb_135940_010--Hb_021596_080 Hb_076175_010 Hb_076175_010 Hb_135940_010--Hb_076175_010 Hb_030982_020 Hb_030982_020 Hb_135940_010--Hb_030982_020 Hb_001935_150 Hb_001935_150 Hb_135940_010--Hb_001935_150 Hb_002740_010 Hb_002740_010 Hb_135940_010--Hb_002740_010 Hb_008221_110 Hb_008221_110 Hb_001017_060--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_001017_060--Hb_175976_010 Hb_007534_020 Hb_007534_020 Hb_001017_060--Hb_007534_020 Hb_000258_030 Hb_000258_030 Hb_001017_060--Hb_000258_030 Hb_001017_060--Hb_014834_040 Hb_041205_010 Hb_041205_010 Hb_029142_070--Hb_041205_010 Hb_002078_260 Hb_002078_260 Hb_029142_070--Hb_002078_260 Hb_005694_020 Hb_005694_020 Hb_029142_070--Hb_005694_020 Hb_000641_020 Hb_000641_020 Hb_029142_070--Hb_000641_020 Hb_132180_010 Hb_132180_010 Hb_029142_070--Hb_132180_010 Hb_007894_230 Hb_007894_230 Hb_029142_070--Hb_007894_230 Hb_023732_060 Hb_023732_060 Hb_000656_340--Hb_023732_060 Hb_000656_340--Hb_140543_010 Hb_006995_040 Hb_006995_040 Hb_000656_340--Hb_006995_040 Hb_020035_020 Hb_020035_020 Hb_000656_340--Hb_020035_020 Hb_130235_010 Hb_130235_010 Hb_000656_340--Hb_130235_010 Hb_000419_130 Hb_000419_130 Hb_000656_340--Hb_000419_130 Hb_014834_040--Hb_001571_110 Hb_042710_010 Hb_042710_010 Hb_014834_040--Hb_042710_010 Hb_098852_010 Hb_098852_010 Hb_014834_040--Hb_098852_010 Hb_014834_040--Hb_132180_010 Hb_014834_040--Hb_020035_020 Hb_014834_040--Hb_006995_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.376374 0 0.180284 4.5588 0.756555 4.19816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54394 5.28271 1.39113 2.42591 1.01974

CAGE analysis