Hb_021596_080

Information

Type -
Description -
Location Contig21596: 56718-57094
Sequence    

Annotation

kegg
ID tcc:TCM_021105
description Ribosomal protein L33 family protein
nr
ID ADR71262.1
description 50S ribosomal protein L33A [Hevea brasiliensis]
swissprot
ID B6IN38
description 50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1
trembl
ID I3NMM5
description 50S ribosomal protein L33A OS=Hevea brasiliensis GN=RPL33A PE=2 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l33 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021596_080 0.0 - - 50S ribosomal protein L33A [Hevea brasiliensis]
2 Hb_135940_010 0.1416226079 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
3 Hb_014834_040 0.1661266789 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
4 Hb_076175_010 0.1758005394 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
5 Hb_098852_010 0.1789085789 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
6 Hb_011644_010 0.1866047583 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
7 Hb_000097_010 0.1866249834 - - -
8 Hb_005694_020 0.1881642337 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
9 Hb_009372_030 0.189917884 - - 50S ribosomal protein L6, putative [Ricinus communis]
10 Hb_007054_010 0.1925774759 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
11 Hb_001571_110 0.1937365299 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
12 Hb_030982_020 0.1953183369 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
13 Hb_042710_010 0.1974048691 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_002078_260 0.1974532751 - - unknown [Populus trichocarpa]
15 Hb_001935_150 0.2017197687 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
16 Hb_007894_230 0.2081400112 - - 30S ribosomal protein S14, putative [Ricinus communis]
17 Hb_132180_010 0.208854188 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
18 Hb_000030_220 0.2090067908 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
19 Hb_130235_010 0.2139815774 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
20 Hb_000340_520 0.2147592585 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]

Gene co-expression network

sample Hb_021596_080 Hb_021596_080 Hb_135940_010 Hb_135940_010 Hb_021596_080--Hb_135940_010 Hb_014834_040 Hb_014834_040 Hb_021596_080--Hb_014834_040 Hb_076175_010 Hb_076175_010 Hb_021596_080--Hb_076175_010 Hb_098852_010 Hb_098852_010 Hb_021596_080--Hb_098852_010 Hb_011644_010 Hb_011644_010 Hb_021596_080--Hb_011644_010 Hb_000097_010 Hb_000097_010 Hb_021596_080--Hb_000097_010 Hb_135940_010--Hb_076175_010 Hb_135940_010--Hb_011644_010 Hb_030982_020 Hb_030982_020 Hb_135940_010--Hb_030982_020 Hb_001935_150 Hb_001935_150 Hb_135940_010--Hb_001935_150 Hb_002740_010 Hb_002740_010 Hb_135940_010--Hb_002740_010 Hb_001571_110 Hb_001571_110 Hb_014834_040--Hb_001571_110 Hb_042710_010 Hb_042710_010 Hb_014834_040--Hb_042710_010 Hb_014834_040--Hb_098852_010 Hb_132180_010 Hb_132180_010 Hb_014834_040--Hb_132180_010 Hb_020035_020 Hb_020035_020 Hb_014834_040--Hb_020035_020 Hb_006995_040 Hb_006995_040 Hb_014834_040--Hb_006995_040 Hb_009372_030 Hb_009372_030 Hb_076175_010--Hb_009372_030 Hb_076175_010--Hb_001935_150 Hb_076175_010--Hb_030982_020 Hb_002482_040 Hb_002482_040 Hb_076175_010--Hb_002482_040 Hb_002078_260 Hb_002078_260 Hb_076175_010--Hb_002078_260 Hb_010449_040 Hb_010449_040 Hb_076175_010--Hb_010449_040 Hb_041205_010 Hb_041205_010 Hb_098852_010--Hb_041205_010 Hb_098852_010--Hb_030982_020 Hb_098852_010--Hb_132180_010 Hb_098852_010--Hb_002078_260 Hb_003861_040 Hb_003861_040 Hb_098852_010--Hb_003861_040 Hb_000326_090 Hb_000326_090 Hb_098852_010--Hb_000326_090 Hb_011644_010--Hb_000097_010 Hb_001017_060 Hb_001017_060 Hb_011644_010--Hb_001017_060 Hb_029142_070 Hb_029142_070 Hb_011644_010--Hb_029142_070 Hb_000656_340 Hb_000656_340 Hb_011644_010--Hb_000656_340 Hb_011644_010--Hb_014834_040 Hb_000097_010--Hb_001571_110 Hb_140543_010 Hb_140543_010 Hb_000097_010--Hb_140543_010 Hb_006541_020 Hb_006541_020 Hb_000097_010--Hb_006541_020 Hb_172706_030 Hb_172706_030 Hb_000097_010--Hb_172706_030 Hb_000025_240 Hb_000025_240 Hb_000097_010--Hb_000025_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.7094 3.27551 24.1665 303.692 8.3488 291.927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
275.176 363.627 152.869 356.02 45.4685

CAGE analysis