Hb_002740_010

Information

Type -
Description -
Location Contig2740: 78471-79546
Sequence    

Annotation

kegg
ID gmx:100792684
description hydrophobic protein LTI6A-like
nr
ID ADC45381.1
description stress-induced hydrophobic peptide [Cleistogenes songorica]
swissprot
ID Q8H5T6
description Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1
trembl
ID D6C5C2
description Stress-induced hydrophobic peptide OS=Cleistogenes songorica PE=2 SV=1
Gene Ontology
ID GO:0016021
description stress-induced hydrophobic peptide

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28659: 78339-79781 , PASA_asmbl_28660: 78764-79781
cDNA
(Sanger)
(ID:Location)		 002_B13.ab1: 78449-79650 , 002_M12.ab1: 78505-79650 , 004_J02.ab1: 78505-79651 , 005_J10.ab1: 78443-79650 , 008_E07.ab1: 78451-79650 , 010_I18.ab1: 78445-79652 , 015_C20.ab1: 78585-79650 , 022_C04.ab1: 78459-79645 , 024_F07.ab1: 78529-79650 , 024_L04.ab1: 78457-79655 , 027_P04.ab1: 78443-79653 , 032_L01.ab1: 78442-79650 , 038_B02.ab1: 78445-79781 , 039_H08.ab1: 78450-79650 , 039_J19.ab1: 78585-79650 , 043_H08.ab1: 78453-79472 , 046_K04.ab1: 78505-79650 , 050_L06.ab1: 78455-79650 , 050_O05.ab1: 78445-79652

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_010 0.0 - - stress-induced hydrophobic peptide [Cleistogenes songorica]
2 Hb_001935_150 0.1526931773 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
3 Hb_075359_010 0.169193515 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
4 Hb_025075_010 0.1797420964 - - 50S ribosomal protein L24 [Glycine soja]
5 Hb_135940_010 0.1807569751 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
6 Hb_007894_230 0.1812879666 - - 30S ribosomal protein S14, putative [Ricinus communis]
7 Hb_001163_040 0.1859576 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
8 Hb_011512_050 0.1860399501 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
9 Hb_080601_020 0.1863596264 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
10 Hb_000562_060 0.187082913 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
11 Hb_014834_030 0.1917195778 - - -
12 Hb_002843_210 0.1918842279 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
13 Hb_001220_010 0.1939716915 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
14 Hb_001195_490 0.1947042384 - - hypothetical protein glysoja_018593 [Glycine soja]
15 Hb_076175_010 0.2011647482 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
16 Hb_132180_010 0.2022443325 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
17 Hb_000181_380 0.2025475559 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
18 Hb_002078_260 0.2052943154 - - unknown [Populus trichocarpa]
19 Hb_002284_050 0.2065849875 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
20 Hb_001233_020 0.2093326187 - - hypothetical protein JCGZ_04109 [Jatropha curcas]

Gene co-expression network

sample Hb_002740_010 Hb_002740_010 Hb_001935_150 Hb_001935_150 Hb_002740_010--Hb_001935_150 Hb_075359_010 Hb_075359_010 Hb_002740_010--Hb_075359_010 Hb_025075_010 Hb_025075_010 Hb_002740_010--Hb_025075_010 Hb_135940_010 Hb_135940_010 Hb_002740_010--Hb_135940_010 Hb_007894_230 Hb_007894_230 Hb_002740_010--Hb_007894_230 Hb_001163_040 Hb_001163_040 Hb_002740_010--Hb_001163_040 Hb_014834_030 Hb_014834_030 Hb_001935_150--Hb_014834_030 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_002843_210 Hb_002843_210 Hb_075359_010--Hb_002843_210 Hb_075359_010--Hb_001935_150 Hb_042710_010 Hb_042710_010 Hb_075359_010--Hb_042710_010 Hb_075359_010--Hb_000025_240 Hb_004333_030 Hb_004333_030 Hb_075359_010--Hb_004333_030 Hb_187083_010 Hb_187083_010 Hb_075359_010--Hb_187083_010 Hb_000240_120 Hb_000240_120 Hb_025075_010--Hb_000240_120 Hb_000562_060 Hb_000562_060 Hb_025075_010--Hb_000562_060 Hb_025075_010--Hb_001163_040 Hb_011512_050 Hb_011512_050 Hb_025075_010--Hb_011512_050 Hb_001233_020 Hb_001233_020 Hb_025075_010--Hb_001233_020 Hb_021596_080 Hb_021596_080 Hb_135940_010--Hb_021596_080 Hb_076175_010 Hb_076175_010 Hb_135940_010--Hb_076175_010 Hb_011644_010 Hb_011644_010 Hb_135940_010--Hb_011644_010 Hb_030982_020 Hb_030982_020 Hb_135940_010--Hb_030982_020 Hb_135940_010--Hb_001935_150 Hb_002078_260 Hb_002078_260 Hb_007894_230--Hb_002078_260 Hb_080601_020 Hb_080601_020 Hb_007894_230--Hb_080601_020 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_001220_010 Hb_001220_010 Hb_007894_230--Hb_001220_010 Hb_005694_020 Hb_005694_020 Hb_007894_230--Hb_005694_020 Hb_001163_040--Hb_011512_050 Hb_001163_040--Hb_002078_260 Hb_001163_040--Hb_001220_010 Hb_006452_110 Hb_006452_110 Hb_001163_040--Hb_006452_110 Hb_001163_040--Hb_007894_230 Hb_001163_040--Hb_080601_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.8258 4.67271 11.4863 1427.68 40.147 779.143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
924.879 1377.15 796.587 170.371 60.0907

CAGE analysis