Hb_025075_010

Information

Type -
Description -
Location Contig25075: 10165-11410
Sequence    

Annotation

kegg
ID rcu:RCOM_0286390
description mitochondrial ribosomal protein L24, putative
nr
ID KHN03812.1
description 50S ribosomal protein L24 [Glycine soja]
swissprot
ID C4KZN5
description 50S ribosomal protein L24 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplX PE=3 SV=1
trembl
ID A0A0B2P878
description 50S ribosomal protein L24 OS=Glycine soja GN=glysoja_011041 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025075_010 0.0 - - 50S ribosomal protein L24 [Glycine soja]
2 Hb_002740_010 0.1797420964 - - stress-induced hydrophobic peptide [Cleistogenes songorica]
3 Hb_000240_120 0.2298244585 - - ras-related protein Rab-5B [Reticulomyxa filosa]
4 Hb_000562_060 0.2358967719 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
5 Hb_001163_040 0.2376185198 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
6 Hb_011512_050 0.2385783887 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
7 Hb_001233_020 0.250636837 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
8 Hb_000240_100 0.2624067853 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
9 Hb_000671_120 0.2636493395 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
10 Hb_054127_060 0.2651422529 - - hypothetical protein POPTR_0004s09330g [Populus trichocarpa]
11 Hb_001516_020 0.2659823762 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Jatropha curcas]
12 Hb_001220_010 0.2697848893 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
13 Hb_033376_010 0.276433698 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
14 Hb_045941_010 0.2770910509 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
15 Hb_132180_010 0.2783118933 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
16 Hb_030627_080 0.279421744 - - protein with unknown function [Ricinus communis]
17 Hb_001922_180 0.2801324973 - - hevamine-A precursor, putative [Ricinus communis]
18 Hb_001935_150 0.2807563241 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
19 Hb_080601_020 0.2814968761 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
20 Hb_007894_230 0.2816075569 - - 30S ribosomal protein S14, putative [Ricinus communis]

Gene co-expression network

sample Hb_025075_010 Hb_025075_010 Hb_002740_010 Hb_002740_010 Hb_025075_010--Hb_002740_010 Hb_000240_120 Hb_000240_120 Hb_025075_010--Hb_000240_120 Hb_000562_060 Hb_000562_060 Hb_025075_010--Hb_000562_060 Hb_001163_040 Hb_001163_040 Hb_025075_010--Hb_001163_040 Hb_011512_050 Hb_011512_050 Hb_025075_010--Hb_011512_050 Hb_001233_020 Hb_001233_020 Hb_025075_010--Hb_001233_020 Hb_001935_150 Hb_001935_150 Hb_002740_010--Hb_001935_150 Hb_075359_010 Hb_075359_010 Hb_002740_010--Hb_075359_010 Hb_135940_010 Hb_135940_010 Hb_002740_010--Hb_135940_010 Hb_007894_230 Hb_007894_230 Hb_002740_010--Hb_007894_230 Hb_002740_010--Hb_001163_040 Hb_000240_120--Hb_011512_050 Hb_175933_010 Hb_175933_010 Hb_000240_120--Hb_175933_010 Hb_000240_120--Hb_001163_040 Hb_132180_010 Hb_132180_010 Hb_000240_120--Hb_132180_010 Hb_000240_120--Hb_001233_020 Hb_001208_030 Hb_001208_030 Hb_000240_120--Hb_001208_030 Hb_000562_060--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000562_060--Hb_000671_120 Hb_025288_010 Hb_025288_010 Hb_000562_060--Hb_025288_010 Hb_000562_060--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000562_060--Hb_011037_020 Hb_001220_010 Hb_001220_010 Hb_000562_060--Hb_001220_010 Hb_001163_040--Hb_011512_050 Hb_002078_260 Hb_002078_260 Hb_001163_040--Hb_002078_260 Hb_001163_040--Hb_001220_010 Hb_006452_110 Hb_006452_110 Hb_001163_040--Hb_006452_110 Hb_001163_040--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_001163_040--Hb_080601_020 Hb_011512_050--Hb_002078_260 Hb_000240_100 Hb_000240_100 Hb_011512_050--Hb_000240_100 Hb_011512_050--Hb_132180_010 Hb_011214_100 Hb_011214_100 Hb_011512_050--Hb_011214_100 Hb_001233_020--Hb_001220_010 Hb_001233_020--Hb_132180_010 Hb_004669_030 Hb_004669_030 Hb_001233_020--Hb_004669_030 Hb_001233_020--Hb_000671_120 Hb_001233_020--Hb_080601_020 Hb_000994_110 Hb_000994_110 Hb_001233_020--Hb_000994_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0638251 0 0 0.548124 0 0.132546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149954 0.353375 0.196688 0.0493028 0

CAGE analysis