Hb_000562_060

Information

Type -
Description -
Location Contig562: 84789-85171
Sequence    

Annotation

kegg
ID pmum:103321277
description uncharacterized LOC103321277
nr
ID XP_011088539.1
description PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID A9PDU9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02650g PE=2 SV=1
Gene Ontology
ID GO:0000276
description atp synthase e chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48866: 83198-85099
cDNA
(Sanger)
(ID:Location)		 042_M23.ab1: 83276-85052 , 046_C05.ab1: 83276-85099 , 049_D01.ab1: 83244-85015 , 052_N09.ab1: 83244-85020

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_060 0.0 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
2 Hb_132180_010 0.1705545481 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
3 Hb_000671_120 0.1739050494 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
4 Hb_025288_010 0.1756989876 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
5 Hb_001233_020 0.1784445555 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
6 Hb_011037_020 0.1829612322 - - unknown [Picea sitchensis]
7 Hb_001220_010 0.1850761981 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
8 Hb_002740_010 0.187082913 - - stress-induced hydrophobic peptide [Cleistogenes songorica]
9 Hb_000665_110 0.1915775345 - - Ribosomal protein S11-beta [Theobroma cacao]
10 Hb_011512_050 0.198399219 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
11 Hb_000240_120 0.2076218412 - - ras-related protein Rab-5B [Reticulomyxa filosa]
12 Hb_004669_030 0.2088650995 - - -
13 Hb_001163_040 0.2130669958 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
14 Hb_001396_250 0.2219225248 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
15 Hb_099298_010 0.2229387681 - - -
16 Hb_001205_160 0.2230025995 - - hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
17 Hb_029142_070 0.2233753407 - - -
18 Hb_011214_100 0.2233785787 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
19 Hb_080601_020 0.2235933488 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
20 Hb_000125_020 0.2236998423 transcription factor TF Family: mTERF -

Gene co-expression network

sample Hb_000562_060 Hb_000562_060 Hb_132180_010 Hb_132180_010 Hb_000562_060--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000562_060--Hb_000671_120 Hb_025288_010 Hb_025288_010 Hb_000562_060--Hb_025288_010 Hb_001233_020 Hb_001233_020 Hb_000562_060--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000562_060--Hb_011037_020 Hb_001220_010 Hb_001220_010 Hb_000562_060--Hb_001220_010 Hb_002078_260 Hb_002078_260 Hb_132180_010--Hb_002078_260 Hb_132180_010--Hb_001233_020 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_132180_010--Hb_001220_010 Hb_000671_120--Hb_004669_030 Hb_000671_120--Hb_001220_010 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_000671_120--Hb_001233_020 Hb_000671_120--Hb_011037_020 Hb_025288_010--Hb_132180_010 Hb_025288_010--Hb_002078_260 Hb_025288_010--Hb_011037_020 Hb_029142_070 Hb_029142_070 Hb_025288_010--Hb_029142_070 Hb_030982_020 Hb_030982_020 Hb_025288_010--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_025288_010--Hb_011214_100 Hb_001233_020--Hb_001220_010 Hb_001233_020--Hb_004669_030 Hb_080601_020 Hb_080601_020 Hb_001233_020--Hb_080601_020 Hb_000994_110 Hb_000994_110 Hb_001233_020--Hb_000994_110 Hb_011037_020--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_011037_020--Hb_012675_080 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050 Hb_001220_010--Hb_080601_020 Hb_001220_010--Hb_004669_030 Hb_007894_230 Hb_007894_230 Hb_001220_010--Hb_007894_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.57022 2.71719 5.71947 485.038 5.8544 217.436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
203.38 230.534 57.5403 41.0705 14.1267

CAGE analysis