Hb_000994_110

Information

Type -
Description -
Location Contig994: 89110-90775
Sequence    

Annotation

kegg
ID rcu:RCOM_1439840
description hypothetical protein
nr
ID XP_002531879.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0W0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1439840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64813: 88781-90725 , PASA_asmbl_64814: 90273-90588 , PASA_asmbl_64816: 91649-96884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000994_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007545_050 0.1259959161 - - -
3 Hb_182964_010 0.1390331708 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
4 Hb_006995_040 0.1422174047 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
5 Hb_014834_140 0.1451795963 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
6 Hb_001233_020 0.1527583345 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
7 Hb_005367_010 0.1532993442 - - -
8 Hb_000243_040 0.1537284414 - - -
9 Hb_001220_010 0.1553079887 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
10 Hb_004669_030 0.1572977503 - - -
11 Hb_000641_020 0.1613138207 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
12 Hb_010504_030 0.1649432455 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
13 Hb_001396_250 0.1678739649 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
14 Hb_152554_010 0.1711169122 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
15 Hb_000015_070 0.1718915709 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
16 Hb_001377_180 0.1722123065 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
17 Hb_166480_010 0.1755481031 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
18 Hb_016604_030 0.1757248885 - - histone H4 [Zea mays]
19 Hb_002168_010 0.1759707963 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
20 Hb_003861_040 0.1760795788 - - hypothetical protein JCGZ_16325 [Jatropha curcas]

Gene co-expression network

sample Hb_000994_110 Hb_000994_110 Hb_007545_050 Hb_007545_050 Hb_000994_110--Hb_007545_050 Hb_182964_010 Hb_182964_010 Hb_000994_110--Hb_182964_010 Hb_006995_040 Hb_006995_040 Hb_000994_110--Hb_006995_040 Hb_014834_140 Hb_014834_140 Hb_000994_110--Hb_014834_140 Hb_001233_020 Hb_001233_020 Hb_000994_110--Hb_001233_020 Hb_005367_010 Hb_005367_010 Hb_000994_110--Hb_005367_010 Hb_010504_030 Hb_010504_030 Hb_007545_050--Hb_010504_030 Hb_007545_050--Hb_182964_010 Hb_166480_010 Hb_166480_010 Hb_007545_050--Hb_166480_010 Hb_007545_050--Hb_006995_040 Hb_082407_010 Hb_082407_010 Hb_007545_050--Hb_082407_010 Hb_182964_010--Hb_006995_040 Hb_016604_030 Hb_016604_030 Hb_182964_010--Hb_016604_030 Hb_001220_010 Hb_001220_010 Hb_182964_010--Hb_001220_010 Hb_001754_070 Hb_001754_070 Hb_182964_010--Hb_001754_070 Hb_000215_200 Hb_000215_200 Hb_006995_040--Hb_000215_200 Hb_000656_340 Hb_000656_340 Hb_006995_040--Hb_000656_340 Hb_002284_050 Hb_002284_050 Hb_006995_040--Hb_002284_050 Hb_000710_070 Hb_000710_070 Hb_006995_040--Hb_000710_070 Hb_006995_040--Hb_014834_140 Hb_003405_060 Hb_003405_060 Hb_014834_140--Hb_003405_060 Hb_086703_010 Hb_086703_010 Hb_014834_140--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_014834_140--Hb_004807_060 Hb_001610_130 Hb_001610_130 Hb_014834_140--Hb_001610_130 Hb_003043_070 Hb_003043_070 Hb_014834_140--Hb_003043_070 Hb_001057_050 Hb_001057_050 Hb_014834_140--Hb_001057_050 Hb_001233_020--Hb_001220_010 Hb_132180_010 Hb_132180_010 Hb_001233_020--Hb_132180_010 Hb_004669_030 Hb_004669_030 Hb_001233_020--Hb_004669_030 Hb_000671_120 Hb_000671_120 Hb_001233_020--Hb_000671_120 Hb_080601_020 Hb_080601_020 Hb_001233_020--Hb_080601_020 Hb_001377_180 Hb_001377_180 Hb_005367_010--Hb_001377_180 Hb_152554_010 Hb_152554_010 Hb_005367_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_005367_010--Hb_136731_010 Hb_007441_270 Hb_007441_270 Hb_005367_010--Hb_007441_270 Hb_003861_040 Hb_003861_040 Hb_005367_010--Hb_003861_040 Hb_000176_120 Hb_000176_120 Hb_005367_010--Hb_000176_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7902 4.60907 17.5319 131.371 32.6238 153.526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.7596 118.768 12.9967 27.0416 3.42321

CAGE analysis