Hb_002284_050

Information

Type -
Description -
Location Contig2284: 45451-46561
Sequence    

Annotation

kegg
ID pop:POPTR_0002s00740g
description hypothetical protein
nr
ID XP_006386132.1
description hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GP16
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s00740g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23793: 44040-45640
cDNA
(Sanger)
(ID:Location)		 008_N19.ab1: 44047-45628 , 012_N13.ab1: 44089-45575 , 028_G11.ab1: 44040-45584

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_050 0.0 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
2 Hb_000215_200 0.1118979502 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
3 Hb_001504_080 0.1210700268 - - golgi snare 11 protein, putative [Ricinus communis]
4 Hb_000710_070 0.1263942164 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
5 Hb_080601_020 0.1315492558 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
6 Hb_002660_050 0.1358716141 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
7 Hb_172706_030 0.1367576018 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
8 Hb_006995_040 0.1370285693 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
9 Hb_004336_050 0.1417816939 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
10 Hb_000672_120 0.1426455956 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
11 Hb_000641_020 0.1486226165 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
12 Hb_041205_010 0.1487269968 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005588_070 0.1533559359 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
14 Hb_012653_040 0.1552880063 - - UV-induced protein uvi31, putative [Ricinus communis]
15 Hb_000258_030 0.1620083656 - - -
16 Hb_002878_010 0.1623843086 - - -
17 Hb_000322_140 0.1635480485 - - hypothetical protein RCOM_1047200 [Ricinus communis]
18 Hb_003994_270 0.1642979167 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
19 Hb_003688_110 0.164961189 - - -
20 Hb_029142_070 0.1682250381 - - -

Gene co-expression network

sample Hb_002284_050 Hb_002284_050 Hb_000215_200 Hb_000215_200 Hb_002284_050--Hb_000215_200 Hb_001504_080 Hb_001504_080 Hb_002284_050--Hb_001504_080 Hb_000710_070 Hb_000710_070 Hb_002284_050--Hb_000710_070 Hb_080601_020 Hb_080601_020 Hb_002284_050--Hb_080601_020 Hb_002660_050 Hb_002660_050 Hb_002284_050--Hb_002660_050 Hb_172706_030 Hb_172706_030 Hb_002284_050--Hb_172706_030 Hb_041205_010 Hb_041205_010 Hb_000215_200--Hb_041205_010 Hb_006995_040 Hb_006995_040 Hb_000215_200--Hb_006995_040 Hb_000641_020 Hb_000641_020 Hb_000215_200--Hb_000641_020 Hb_003994_270 Hb_003994_270 Hb_000215_200--Hb_003994_270 Hb_132180_010 Hb_132180_010 Hb_000215_200--Hb_132180_010 Hb_004336_050 Hb_004336_050 Hb_001504_080--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_001504_080--Hb_180301_010 Hb_012653_040 Hb_012653_040 Hb_001504_080--Hb_012653_040 Hb_037887_010 Hb_037887_010 Hb_001504_080--Hb_037887_010 Hb_000083_170 Hb_000083_170 Hb_001504_080--Hb_000083_170 Hb_005588_070 Hb_005588_070 Hb_001504_080--Hb_005588_070 Hb_000710_070--Hb_080601_020 Hb_000710_070--Hb_041205_010 Hb_000710_070--Hb_000641_020 Hb_029142_070 Hb_029142_070 Hb_000710_070--Hb_029142_070 Hb_001220_010 Hb_001220_010 Hb_000710_070--Hb_001220_010 Hb_080601_020--Hb_001220_010 Hb_007894_230 Hb_007894_230 Hb_080601_020--Hb_007894_230 Hb_002078_260 Hb_002078_260 Hb_080601_020--Hb_002078_260 Hb_016604_030 Hb_016604_030 Hb_080601_020--Hb_016604_030 Hb_001163_040 Hb_001163_040 Hb_080601_020--Hb_001163_040 Hb_002660_050--Hb_001504_080 Hb_004235_030 Hb_004235_030 Hb_002660_050--Hb_004235_030 Hb_004899_050 Hb_004899_050 Hb_002660_050--Hb_004899_050 Hb_028420_020 Hb_028420_020 Hb_002660_050--Hb_028420_020 Hb_002112_040 Hb_002112_040 Hb_002660_050--Hb_002112_040 Hb_001998_230 Hb_001998_230 Hb_002660_050--Hb_001998_230 Hb_172706_030--Hb_004336_050 Hb_140543_010 Hb_140543_010 Hb_172706_030--Hb_140543_010 Hb_000672_120 Hb_000672_120 Hb_172706_030--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_172706_030--Hb_002878_010 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8973 1.03432 5.44084 82.217 18.2029 84.4718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.2347 69.9718 49.7133 14.2802 20.2678

CAGE analysis