Hb_029142_070

Information

Type -
Description -
Location Contig29142: 53942-54220
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30561: 48565-54173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029142_070 0.0 - - -
2 Hb_041205_010 0.1252695083 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002078_260 0.1258089729 - - unknown [Populus trichocarpa]
4 Hb_005694_020 0.1279090027 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
5 Hb_000641_020 0.1294493187 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
6 Hb_132180_010 0.134465965 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_007894_230 0.1350761763 - - 30S ribosomal protein S14, putative [Ricinus communis]
8 Hb_000710_070 0.1365699727 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
9 Hb_025288_010 0.1392103829 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
10 Hb_002562_110 0.1401389934 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
11 Hb_082006_010 0.1477551354 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001220_010 0.1511785509 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
13 Hb_002168_010 0.1530703823 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
14 Hb_004669_030 0.1548433796 - - -
15 Hb_000215_200 0.1561581637 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
16 Hb_000635_070 0.1584708347 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
17 Hb_006153_030 0.160277966 - - PREDICTED: probable transaldolase [Jatropha curcas]
18 Hb_003688_110 0.1607885897 - - -
19 Hb_000125_020 0.1613086461 transcription factor TF Family: mTERF -
20 Hb_080601_020 0.1616130813 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]

Gene co-expression network

sample Hb_029142_070 Hb_029142_070 Hb_041205_010 Hb_041205_010 Hb_029142_070--Hb_041205_010 Hb_002078_260 Hb_002078_260 Hb_029142_070--Hb_002078_260 Hb_005694_020 Hb_005694_020 Hb_029142_070--Hb_005694_020 Hb_000641_020 Hb_000641_020 Hb_029142_070--Hb_000641_020 Hb_132180_010 Hb_132180_010 Hb_029142_070--Hb_132180_010 Hb_007894_230 Hb_007894_230 Hb_029142_070--Hb_007894_230 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_082006_010 Hb_082006_010 Hb_041205_010--Hb_082006_010 Hb_041205_010--Hb_002078_260 Hb_041205_010--Hb_000641_020 Hb_002078_260--Hb_007894_230 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_132180_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_005694_020--Hb_007894_230 Hb_005694_020--Hb_082006_010 Hb_005694_020--Hb_041205_010 Hb_005694_020--Hb_132180_010 Hb_000641_020--Hb_000215_200 Hb_003994_270 Hb_003994_270 Hb_000641_020--Hb_003994_270 Hb_000635_070 Hb_000635_070 Hb_000641_020--Hb_000635_070 Hb_000710_070 Hb_000710_070 Hb_000641_020--Hb_000710_070 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_132180_010--Hb_000635_070 Hb_001220_010 Hb_001220_010 Hb_132180_010--Hb_001220_010 Hb_080601_020 Hb_080601_020 Hb_007894_230--Hb_080601_020 Hb_001935_150 Hb_001935_150 Hb_007894_230--Hb_001935_150 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_007894_230--Hb_001220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1234 0.645809 0.166055 10.0593 1.54446 7.93515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3426 7.15239 1.9533 2.66881 2.639

CAGE analysis