Hb_135940_010

Information

Type -
Description -
Location Contig135940: 836-1891
Sequence    

Annotation

kegg
ID rcu:RCOM_0353890
description hypothetical protein
nr
ID KDP29373.1
description hypothetical protein JCGZ_18294 [Jatropha curcas]
swissprot
ID Q7XYY2
description Mediator of RNA polymerase II transcription subunit 25 OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
trembl
ID A0A067K2V8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18294 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 25 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135940_010 0.0 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
2 Hb_021596_080 0.1416226079 - - 50S ribosomal protein L33A [Hevea brasiliensis]
3 Hb_076175_010 0.155264361 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
4 Hb_011644_010 0.1580673008 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
5 Hb_030982_020 0.1740358669 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
6 Hb_001935_150 0.1770832898 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
7 Hb_002740_010 0.1807569751 - - stress-induced hydrophobic peptide [Cleistogenes songorica]
8 Hb_009372_030 0.1819962872 - - 50S ribosomal protein L6, putative [Ricinus communis]
9 Hb_132180_010 0.1877972336 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
10 Hb_002078_260 0.1878080157 - - unknown [Populus trichocarpa]
11 Hb_042710_010 0.188226703 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
12 Hb_014834_040 0.1929154538 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
13 Hb_098852_010 0.1934684135 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_007894_230 0.196236789 - - 30S ribosomal protein S14, putative [Ricinus communis]
15 Hb_005694_020 0.1994819467 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
16 Hb_001296_030 0.2002070631 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
17 Hb_075359_010 0.2032629039 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_025288_010 0.2034473569 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
19 Hb_041205_010 0.2036553399 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000174_040 0.2038527758 - - -

Gene co-expression network

sample Hb_135940_010 Hb_135940_010 Hb_021596_080 Hb_021596_080 Hb_135940_010--Hb_021596_080 Hb_076175_010 Hb_076175_010 Hb_135940_010--Hb_076175_010 Hb_011644_010 Hb_011644_010 Hb_135940_010--Hb_011644_010 Hb_030982_020 Hb_030982_020 Hb_135940_010--Hb_030982_020 Hb_001935_150 Hb_001935_150 Hb_135940_010--Hb_001935_150 Hb_002740_010 Hb_002740_010 Hb_135940_010--Hb_002740_010 Hb_014834_040 Hb_014834_040 Hb_021596_080--Hb_014834_040 Hb_021596_080--Hb_076175_010 Hb_098852_010 Hb_098852_010 Hb_021596_080--Hb_098852_010 Hb_021596_080--Hb_011644_010 Hb_000097_010 Hb_000097_010 Hb_021596_080--Hb_000097_010 Hb_009372_030 Hb_009372_030 Hb_076175_010--Hb_009372_030 Hb_076175_010--Hb_001935_150 Hb_076175_010--Hb_030982_020 Hb_002482_040 Hb_002482_040 Hb_076175_010--Hb_002482_040 Hb_002078_260 Hb_002078_260 Hb_076175_010--Hb_002078_260 Hb_010449_040 Hb_010449_040 Hb_076175_010--Hb_010449_040 Hb_011644_010--Hb_000097_010 Hb_001017_060 Hb_001017_060 Hb_011644_010--Hb_001017_060 Hb_029142_070 Hb_029142_070 Hb_011644_010--Hb_029142_070 Hb_000656_340 Hb_000656_340 Hb_011644_010--Hb_000656_340 Hb_011644_010--Hb_014834_040 Hb_030982_020--Hb_002078_260 Hb_011214_100 Hb_011214_100 Hb_030982_020--Hb_011214_100 Hb_030982_020--Hb_098852_010 Hb_041205_010 Hb_041205_010 Hb_030982_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_014834_030 Hb_014834_030 Hb_001935_150--Hb_014834_030 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_002740_010--Hb_001935_150 Hb_075359_010 Hb_075359_010 Hb_002740_010--Hb_075359_010 Hb_025075_010 Hb_025075_010 Hb_002740_010--Hb_025075_010 Hb_002740_010--Hb_007894_230 Hb_001163_040 Hb_001163_040 Hb_002740_010--Hb_001163_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181851 0.0431195 0.0733719 5.46927 0.160074 4.39591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42934 4.5659 3.33538 3.23411 0.603303

CAGE analysis