Hb_000097_010

Information

Type -
Description -
Location Contig97: 9873-13229
Sequence    

Annotation

kegg
ID rcu:RCOM_1135960
description small nuclear ribonucleoprotein U)1a,U)2b, putative
nr
ID -
description -
swissprot
ID Q10MR0
description U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1
trembl
ID U5FWN4
description Small nuclear ribonucleoprotein U2B OS=Populus trichocarpa GN=POPTR_0013s14980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000097_010 0.0 - - -
2 Hb_001571_110 0.1180272193 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
3 Hb_011644_010 0.1243530062 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
4 Hb_140543_010 0.1412851233 - - -
5 Hb_006541_020 0.1468275487 - - unknown [Lotus japonicus]
6 Hb_172706_030 0.1493847138 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
7 Hb_000025_240 0.1541044683 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
8 Hb_000419_130 0.1621174192 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
9 Hb_001935_150 0.1623533883 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
10 Hb_014834_040 0.1626940004 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
11 Hb_000834_030 0.1664027472 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
12 Hb_001769_100 0.1679962618 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
13 Hb_001017_060 0.1694876348 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
14 Hb_000030_220 0.1697141295 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
15 Hb_042710_010 0.1702424611 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_001301_050 0.1744649125 - - -
17 Hb_007894_230 0.1747498171 - - 30S ribosomal protein S14, putative [Ricinus communis]
18 Hb_000656_340 0.1751725431 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
19 Hb_003777_210 0.1765499628 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
20 Hb_014834_030 0.1765542759 - - -

Gene co-expression network

sample Hb_000097_010 Hb_000097_010 Hb_001571_110 Hb_001571_110 Hb_000097_010--Hb_001571_110 Hb_011644_010 Hb_011644_010 Hb_000097_010--Hb_011644_010 Hb_140543_010 Hb_140543_010 Hb_000097_010--Hb_140543_010 Hb_006541_020 Hb_006541_020 Hb_000097_010--Hb_006541_020 Hb_172706_030 Hb_172706_030 Hb_000097_010--Hb_172706_030 Hb_000025_240 Hb_000025_240 Hb_000097_010--Hb_000025_240 Hb_007894_230 Hb_007894_230 Hb_001571_110--Hb_007894_230 Hb_014834_040 Hb_014834_040 Hb_001571_110--Hb_014834_040 Hb_001571_110--Hb_140543_010 Hb_002078_260 Hb_002078_260 Hb_001571_110--Hb_002078_260 Hb_001935_150 Hb_001935_150 Hb_001571_110--Hb_001935_150 Hb_135940_010 Hb_135940_010 Hb_011644_010--Hb_135940_010 Hb_001017_060 Hb_001017_060 Hb_011644_010--Hb_001017_060 Hb_029142_070 Hb_029142_070 Hb_011644_010--Hb_029142_070 Hb_000656_340 Hb_000656_340 Hb_011644_010--Hb_000656_340 Hb_011644_010--Hb_014834_040 Hb_001754_070 Hb_001754_070 Hb_140543_010--Hb_001754_070 Hb_140543_010--Hb_172706_030 Hb_130235_010 Hb_130235_010 Hb_140543_010--Hb_130235_010 Hb_140543_010--Hb_000656_340 Hb_000086_550 Hb_000086_550 Hb_140543_010--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_140543_010--Hb_005357_130 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006718_010 Hb_006718_010 Hb_006541_020--Hb_006718_010 Hb_007520_060 Hb_007520_060 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_000367_030 Hb_000367_030 Hb_006541_020--Hb_000367_030 Hb_004336_050 Hb_004336_050 Hb_172706_030--Hb_004336_050 Hb_000672_120 Hb_000672_120 Hb_172706_030--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_172706_030--Hb_002878_010 Hb_001504_080 Hb_001504_080 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020 Hb_000025_240--Hb_008748_020 Hb_005914_200 Hb_005914_200 Hb_000025_240--Hb_005914_200 Hb_000025_240--Hb_006718_010 Hb_014834_030 Hb_014834_030 Hb_000025_240--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_000025_240--Hb_002025_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29874 0.0199451 0.10766 1.56379 0.311836 2.12603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41512 3.69174 0.663261 1.28031 0.811281

CAGE analysis