Hb_000240_100

Information

Type -
Description -
Location Contig240: 195573-196879
Sequence    

Annotation

kegg
ID egr:104430634
description ras-related protein Rab5-like
nr
ID XP_010041684.1
description PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A058ZSZ0
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L02409 PE=4 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabf2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25138: 195324-216968
cDNA
(Sanger)
(ID:Location)		 036_B04.ab1: 195324-195656

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000240_100 0.0 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
2 Hb_011512_050 0.1369220817 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
3 Hb_000369_120 0.1499788135 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
4 Hb_001969_020 0.1604472034 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
5 Hb_027760_020 0.1686396833 - - hypothetical protein M569_04462, partial [Genlisea aurea]
6 Hb_000217_010 0.1740942511 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
7 Hb_000240_120 0.1757723729 - - ras-related protein Rab-5B [Reticulomyxa filosa]
8 Hb_001163_040 0.1809750523 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
9 Hb_010577_010 0.1843079771 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
10 Hb_175933_010 0.1928533451 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
11 Hb_011037_020 0.1960200217 - - unknown [Picea sitchensis]
12 Hb_002078_260 0.2015385041 - - unknown [Populus trichocarpa]
13 Hb_025288_010 0.2050805448 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
14 Hb_018117_020 0.2127181817 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
15 Hb_000125_020 0.2143925161 transcription factor TF Family: mTERF -
16 Hb_005694_020 0.219004646 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
17 Hb_000683_100 0.2198538159 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
18 Hb_001208_030 0.2226619586 - - conserved hypothetical protein [Ricinus communis]
19 Hb_030982_020 0.2236193733 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
20 Hb_010931_140 0.2237280795 - - -

Gene co-expression network

sample Hb_000240_100 Hb_000240_100 Hb_011512_050 Hb_011512_050 Hb_000240_100--Hb_011512_050 Hb_000369_120 Hb_000369_120 Hb_000240_100--Hb_000369_120 Hb_001969_020 Hb_001969_020 Hb_000240_100--Hb_001969_020 Hb_027760_020 Hb_027760_020 Hb_000240_100--Hb_027760_020 Hb_000217_010 Hb_000217_010 Hb_000240_100--Hb_000217_010 Hb_000240_120 Hb_000240_120 Hb_000240_100--Hb_000240_120 Hb_002078_260 Hb_002078_260 Hb_011512_050--Hb_002078_260 Hb_001163_040 Hb_001163_040 Hb_011512_050--Hb_001163_040 Hb_011512_050--Hb_000240_120 Hb_132180_010 Hb_132180_010 Hb_011512_050--Hb_132180_010 Hb_011214_100 Hb_011214_100 Hb_011512_050--Hb_011214_100 Hb_000369_120--Hb_027760_020 Hb_000369_120--Hb_001969_020 Hb_000223_170 Hb_000223_170 Hb_000369_120--Hb_000223_170 Hb_010931_140 Hb_010931_140 Hb_000369_120--Hb_010931_140 Hb_010577_010 Hb_010577_010 Hb_000369_120--Hb_010577_010 Hb_000683_100 Hb_000683_100 Hb_001969_020--Hb_000683_100 Hb_001969_020--Hb_010577_010 Hb_000016_060 Hb_000016_060 Hb_001969_020--Hb_000016_060 Hb_002960_130 Hb_002960_130 Hb_001969_020--Hb_002960_130 Hb_001969_020--Hb_001163_040 Hb_008642_030 Hb_008642_030 Hb_027760_020--Hb_008642_030 Hb_005167_030 Hb_005167_030 Hb_027760_020--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_027760_020--Hb_002154_110 Hb_000016_170 Hb_000016_170 Hb_027760_020--Hb_000016_170 Hb_005694_020 Hb_005694_020 Hb_027760_020--Hb_005694_020 Hb_000260_280 Hb_000260_280 Hb_000217_010--Hb_000260_280 Hb_000192_020 Hb_000192_020 Hb_000217_010--Hb_000192_020 Hb_175933_010 Hb_175933_010 Hb_000217_010--Hb_175933_010 Hb_029920_020 Hb_029920_020 Hb_000217_010--Hb_029920_020 Hb_032972_010 Hb_032972_010 Hb_000217_010--Hb_032972_010 Hb_000240_120--Hb_175933_010 Hb_000240_120--Hb_001163_040 Hb_000240_120--Hb_132180_010 Hb_001233_020 Hb_001233_020 Hb_000240_120--Hb_001233_020 Hb_001208_030 Hb_001208_030 Hb_000240_120--Hb_001208_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9611 10.0927 11.8971 730.932 7.36385 207.372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
159.001 228.487 274.774 119.675 119.297

CAGE analysis