Hb_000217_010

Information

Type -
Description -
Location Contig217: 24425-26200
Sequence    

Annotation

kegg
ID pop:POPTR_0341s00210g
description hypothetical protein
nr
ID XP_006388096.1
description hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
swissprot
ID Q9P6M2
description Uncharacterized protein C688.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC688.03c PE=3 SV=2
trembl
ID U7DVJ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0341s00210g PE=4 SV=1
Gene Ontology
ID GO:0005829
description amme syndrome candidateprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22398: 24108-50534
cDNA
(Sanger)
(ID:Location)		 003_A17.ab1: 24359-50534

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000217_010 0.0 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
2 Hb_000240_100 0.1740942511 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
3 Hb_000260_280 0.1767078574 - - auxin:hydrogen symporter, putative [Ricinus communis]
4 Hb_000192_020 0.179908578 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
5 Hb_175933_010 0.1815544853 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
6 Hb_029920_020 0.2079969925 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
7 Hb_032972_010 0.2117727032 - - Glycolipid transfer protein, putative [Ricinus communis]
8 Hb_001989_100 0.2145240709 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
9 Hb_001969_020 0.2161887908 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
10 Hb_001454_100 0.2184567295 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
11 Hb_000179_120 0.2193759352 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
12 Hb_001486_270 0.2194147117 - - Ann10 [Manihot esculenta]
13 Hb_000922_120 0.2213667024 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
14 Hb_001635_010 0.2228923994 - - -
15 Hb_010577_010 0.2295072613 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
16 Hb_000210_100 0.230288017 - - pepsin A, putative [Ricinus communis]
17 Hb_012753_030 0.2320805811 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
18 Hb_000094_200 0.2326873166 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000258_060 0.2337442857 - - conserved hypothetical protein [Ricinus communis]
20 Hb_178968_040 0.2365464576 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000217_010 Hb_000217_010 Hb_000240_100 Hb_000240_100 Hb_000217_010--Hb_000240_100 Hb_000260_280 Hb_000260_280 Hb_000217_010--Hb_000260_280 Hb_000192_020 Hb_000192_020 Hb_000217_010--Hb_000192_020 Hb_175933_010 Hb_175933_010 Hb_000217_010--Hb_175933_010 Hb_029920_020 Hb_029920_020 Hb_000217_010--Hb_029920_020 Hb_032972_010 Hb_032972_010 Hb_000217_010--Hb_032972_010 Hb_011512_050 Hb_011512_050 Hb_000240_100--Hb_011512_050 Hb_000369_120 Hb_000369_120 Hb_000240_100--Hb_000369_120 Hb_001969_020 Hb_001969_020 Hb_000240_100--Hb_001969_020 Hb_027760_020 Hb_027760_020 Hb_000240_100--Hb_027760_020 Hb_000240_120 Hb_000240_120 Hb_000240_100--Hb_000240_120 Hb_000260_280--Hb_032972_010 Hb_025466_020 Hb_025466_020 Hb_000260_280--Hb_025466_020 Hb_000210_100 Hb_000210_100 Hb_000260_280--Hb_000210_100 Hb_001454_100 Hb_001454_100 Hb_000260_280--Hb_001454_100 Hb_000260_280--Hb_029920_020 Hb_006903_030 Hb_006903_030 Hb_000260_280--Hb_006903_030 Hb_003304_110 Hb_003304_110 Hb_000192_020--Hb_003304_110 Hb_000192_020--Hb_029920_020 Hb_000192_020--Hb_000260_280 Hb_002743_040 Hb_002743_040 Hb_000192_020--Hb_002743_040 Hb_012753_030 Hb_012753_030 Hb_000192_020--Hb_012753_030 Hb_175933_010--Hb_000240_120 Hb_001208_030 Hb_001208_030 Hb_175933_010--Hb_001208_030 Hb_008206_100 Hb_008206_100 Hb_175933_010--Hb_008206_100 Hb_175933_010--Hb_032972_010 Hb_001208_040 Hb_001208_040 Hb_175933_010--Hb_001208_040 Hb_175933_010--Hb_001969_020 Hb_002320_080 Hb_002320_080 Hb_029920_020--Hb_002320_080 Hb_029920_020--Hb_012753_030 Hb_029920_020--Hb_001454_100 Hb_001486_270 Hb_001486_270 Hb_029920_020--Hb_001486_270 Hb_000683_100 Hb_000683_100 Hb_032972_010--Hb_000683_100 Hb_000027_210 Hb_000027_210 Hb_032972_010--Hb_000027_210 Hb_032972_010--Hb_001208_030 Hb_032972_010--Hb_001208_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15104 0.135248 5.79369 169.587 1.03415 10.1323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7385 35.3204 42.6918 17.4483 27.5136

CAGE analysis