Hb_002743_040

Information

Type -
Description -
Location Contig2743: 39151-45092
Sequence    

Annotation

kegg
ID rcu:RCOM_1354530
description hypothetical protein
nr
ID XP_012467059.1
description PREDICTED: uncharacterized protein LOC105785507 isoform X2 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NNV2
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G161800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002743_040 0.0 - - PREDICTED: uncharacterized protein LOC105785507 isoform X2 [Gossypium raimondii]
2 Hb_000192_020 0.1937077533 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
3 Hb_132840_070 0.2172438779 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
4 Hb_069696_010 0.2193760708 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
5 Hb_003304_110 0.2215365043 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002320_080 0.2293161662 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
7 Hb_006938_050 0.2349502027 - - PREDICTED: uncharacterized protein LOC105648204 [Jatropha curcas]
8 Hb_000260_280 0.2437671051 - - auxin:hydrogen symporter, putative [Ricinus communis]
9 Hb_000336_230 0.245160396 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa007609mg [Prunus persica]
10 Hb_000077_200 0.2490195728 - - PREDICTED: thioredoxin [Jatropha curcas]
11 Hb_029920_020 0.2562788685 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
12 Hb_001142_010 0.2567518724 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
13 Hb_025466_020 0.2597853383 - - tubulin beta-6 [Brassica oleracea var. italica]
14 Hb_002157_040 0.2599210893 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
15 Hb_003502_070 0.2613792938 - - hypothetical protein CISIN_1g0405401mg, partial [Citrus sinensis]
16 Hb_006573_290 0.2635945119 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
17 Hb_001307_110 0.2659433686 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
18 Hb_000217_010 0.2674696638 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
19 Hb_011472_010 0.270096244 - - PREDICTED: protein yippee-like [Jatropha curcas]
20 Hb_003103_010 0.2714264608 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002743_040 Hb_002743_040 Hb_000192_020 Hb_000192_020 Hb_002743_040--Hb_000192_020 Hb_132840_070 Hb_132840_070 Hb_002743_040--Hb_132840_070 Hb_069696_010 Hb_069696_010 Hb_002743_040--Hb_069696_010 Hb_003304_110 Hb_003304_110 Hb_002743_040--Hb_003304_110 Hb_002320_080 Hb_002320_080 Hb_002743_040--Hb_002320_080 Hb_006938_050 Hb_006938_050 Hb_002743_040--Hb_006938_050 Hb_000192_020--Hb_003304_110 Hb_029920_020 Hb_029920_020 Hb_000192_020--Hb_029920_020 Hb_000217_010 Hb_000217_010 Hb_000192_020--Hb_000217_010 Hb_000260_280 Hb_000260_280 Hb_000192_020--Hb_000260_280 Hb_012753_030 Hb_012753_030 Hb_000192_020--Hb_012753_030 Hb_000106_030 Hb_000106_030 Hb_132840_070--Hb_000106_030 Hb_132840_070--Hb_069696_010 Hb_000077_360 Hb_000077_360 Hb_132840_070--Hb_000077_360 Hb_001142_010 Hb_001142_010 Hb_132840_070--Hb_001142_010 Hb_000336_230 Hb_000336_230 Hb_132840_070--Hb_000336_230 Hb_015675_030 Hb_015675_030 Hb_132840_070--Hb_015675_030 Hb_000310_100 Hb_000310_100 Hb_069696_010--Hb_000310_100 Hb_025466_010 Hb_025466_010 Hb_069696_010--Hb_025466_010 Hb_001863_020 Hb_001863_020 Hb_069696_010--Hb_001863_020 Hb_069696_010--Hb_001142_010 Hb_010422_070 Hb_010422_070 Hb_069696_010--Hb_010422_070 Hb_000345_080 Hb_000345_080 Hb_003304_110--Hb_000345_080 Hb_020805_140 Hb_020805_140 Hb_003304_110--Hb_020805_140 Hb_000094_200 Hb_000094_200 Hb_003304_110--Hb_000094_200 Hb_000438_120 Hb_000438_120 Hb_003304_110--Hb_000438_120 Hb_000107_350 Hb_000107_350 Hb_003304_110--Hb_000107_350 Hb_000077_200 Hb_000077_200 Hb_002320_080--Hb_000077_200 Hb_000946_100 Hb_000946_100 Hb_002320_080--Hb_000946_100 Hb_002320_080--Hb_029920_020 Hb_026889_040 Hb_026889_040 Hb_002320_080--Hb_026889_040 Hb_001307_110 Hb_001307_110 Hb_002320_080--Hb_001307_110 Hb_002320_080--Hb_015675_030 Hb_000837_010 Hb_000837_010 Hb_006938_050--Hb_000837_010 Hb_006938_050--Hb_132840_070 Hb_000705_270 Hb_000705_270 Hb_006938_050--Hb_000705_270 Hb_000035_020 Hb_000035_020 Hb_006938_050--Hb_000035_020 Hb_006938_050--Hb_069696_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0961691 0.777653 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.534153 0.343737 0.422731 0.291587 0.548255

CAGE analysis