Hb_000077_360

Information

Type -
Description -
Location Contig77: 280681-283627
Sequence    

Annotation

kegg
ID rcu:RCOM_1175530
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002517946.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q0WUU6
description Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1
trembl
ID B9RW27
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1175530 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable polyol transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57614: 280703-283605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_360 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_132840_070 0.1544296592 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
3 Hb_000106_030 0.1618137315 - - amino acid transporter, putative [Ricinus communis]
4 Hb_005976_010 0.1778044529 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
5 Hb_007534_060 0.1797201732 - - protein binding protein, putative [Ricinus communis]
6 Hb_003197_010 0.1797639426 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000477_040 0.1886366627 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000300_410 0.193112582 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
9 Hb_000849_120 0.2016536844 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
10 Hb_001481_130 0.2051446332 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005470_030 0.2080651085 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
12 Hb_003878_050 0.2141063443 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
13 Hb_001989_100 0.2166551034 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
14 Hb_002284_220 0.2168658207 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
15 Hb_069355_010 0.217125521 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
16 Hb_012707_010 0.2180494916 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
17 Hb_015675_030 0.2196186672 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
18 Hb_003878_220 0.2197213538 - - vacuolar protein sorting, putative [Ricinus communis]
19 Hb_000107_350 0.219955692 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
20 Hb_003778_020 0.22185312 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_360 Hb_000077_360 Hb_132840_070 Hb_132840_070 Hb_000077_360--Hb_132840_070 Hb_000106_030 Hb_000106_030 Hb_000077_360--Hb_000106_030 Hb_005976_010 Hb_005976_010 Hb_000077_360--Hb_005976_010 Hb_007534_060 Hb_007534_060 Hb_000077_360--Hb_007534_060 Hb_003197_010 Hb_003197_010 Hb_000077_360--Hb_003197_010 Hb_000477_040 Hb_000477_040 Hb_000077_360--Hb_000477_040 Hb_132840_070--Hb_000106_030 Hb_069696_010 Hb_069696_010 Hb_132840_070--Hb_069696_010 Hb_001142_010 Hb_001142_010 Hb_132840_070--Hb_001142_010 Hb_000336_230 Hb_000336_230 Hb_132840_070--Hb_000336_230 Hb_015675_030 Hb_015675_030 Hb_132840_070--Hb_015675_030 Hb_000836_060 Hb_000836_060 Hb_000106_030--Hb_000836_060 Hb_000181_460 Hb_000181_460 Hb_000106_030--Hb_000181_460 Hb_000110_060 Hb_000110_060 Hb_000106_030--Hb_000110_060 Hb_000849_120 Hb_000849_120 Hb_000106_030--Hb_000849_120 Hb_003778_020 Hb_003778_020 Hb_000106_030--Hb_003778_020 Hb_000115_250 Hb_000115_250 Hb_005976_010--Hb_000115_250 Hb_000580_110 Hb_000580_110 Hb_005976_010--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_005976_010--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_005976_010--Hb_029223_040 Hb_000438_120 Hb_000438_120 Hb_005976_010--Hb_000438_120 Hb_012707_010 Hb_012707_010 Hb_005976_010--Hb_012707_010 Hb_001488_190 Hb_001488_190 Hb_007534_060--Hb_001488_190 Hb_069355_010 Hb_069355_010 Hb_007534_060--Hb_069355_010 Hb_001289_020 Hb_001289_020 Hb_007534_060--Hb_001289_020 Hb_007534_060--Hb_000477_040 Hb_000032_450 Hb_000032_450 Hb_007534_060--Hb_000032_450 Hb_004102_010 Hb_004102_010 Hb_003197_010--Hb_004102_010 Hb_003197_010--Hb_001488_190 Hb_017358_070 Hb_017358_070 Hb_003197_010--Hb_017358_070 Hb_003197_010--Hb_000477_040 Hb_000445_120 Hb_000445_120 Hb_003197_010--Hb_000445_120 Hb_005470_030 Hb_005470_030 Hb_000477_040--Hb_005470_030 Hb_003878_050 Hb_003878_050 Hb_000477_040--Hb_003878_050 Hb_000477_040--Hb_000849_120 Hb_000477_040--Hb_000110_060 Hb_000465_320 Hb_000465_320 Hb_000477_040--Hb_000465_320 Hb_001904_050 Hb_001904_050 Hb_000477_040--Hb_001904_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.505257 0.630684 5.46861 27.4228 0.630842 0.866549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4123 3.04392 14.0501 7.10017 23.1339

CAGE analysis