Hb_001488_190

Information

Type -
Description -
Location Contig1488: 119804-129638
Sequence    

Annotation

kegg
ID rcu:RCOM_0526780
description alpha-amylase, putative (EC:3.2.1.60)
nr
ID XP_002526120.1
description alpha-amylase, putative [Ricinus communis]
swissprot
ID Q94A41
description Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=AMY3 PE=2 SV=1
trembl
ID B9SJF1
description Alpha-amylase, putative OS=Ricinus communis GN=RCOM_0526780 PE=4 SV=1
Gene Ontology
ID GO:0004556
description alpha-amylase isozyme 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12307: 127989-128491 , PASA_asmbl_12308: 128852-129035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_190 0.0 - - alpha-amylase, putative [Ricinus communis]
2 Hb_000454_040 0.1453581507 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
3 Hb_007534_060 0.170010873 - - protein binding protein, putative [Ricinus communis]
4 Hb_005622_020 0.1815822832 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
5 Hb_003197_010 0.1981619203 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003813_180 0.2054692184 - - sterol desaturase, putative [Ricinus communis]
7 Hb_005470_030 0.2095417308 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
8 Hb_004041_050 0.2102863252 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_042083_030 0.2121568672 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_002045_080 0.2135200405 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
11 Hb_000108_240 0.2166187977 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
12 Hb_004724_170 0.2202812447 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
13 Hb_004449_060 0.2213318182 - - PREDICTED: uncharacterized protein LOC105631660 [Jatropha curcas]
14 Hb_000032_450 0.2246261629 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
15 Hb_020437_020 0.2256914578 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
16 Hb_000477_040 0.2294062093 - - conserved hypothetical protein [Ricinus communis]
17 Hb_121089_050 0.230854771 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000077_360 0.2325818705 - - sugar transporter, putative [Ricinus communis]
19 Hb_002284_220 0.232837095 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
20 Hb_105328_010 0.2354824981 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001488_190 Hb_001488_190 Hb_000454_040 Hb_000454_040 Hb_001488_190--Hb_000454_040 Hb_007534_060 Hb_007534_060 Hb_001488_190--Hb_007534_060 Hb_005622_020 Hb_005622_020 Hb_001488_190--Hb_005622_020 Hb_003197_010 Hb_003197_010 Hb_001488_190--Hb_003197_010 Hb_003813_180 Hb_003813_180 Hb_001488_190--Hb_003813_180 Hb_005470_030 Hb_005470_030 Hb_001488_190--Hb_005470_030 Hb_000454_040--Hb_005622_020 Hb_004724_170 Hb_004724_170 Hb_000454_040--Hb_004724_170 Hb_002028_180 Hb_002028_180 Hb_000454_040--Hb_002028_180 Hb_000454_040--Hb_007534_060 Hb_000312_050 Hb_000312_050 Hb_000454_040--Hb_000312_050 Hb_000077_360 Hb_000077_360 Hb_007534_060--Hb_000077_360 Hb_069355_010 Hb_069355_010 Hb_007534_060--Hb_069355_010 Hb_001289_020 Hb_001289_020 Hb_007534_060--Hb_001289_020 Hb_000477_040 Hb_000477_040 Hb_007534_060--Hb_000477_040 Hb_000032_450 Hb_000032_450 Hb_007534_060--Hb_000032_450 Hb_000108_240 Hb_000108_240 Hb_005622_020--Hb_000108_240 Hb_004041_050 Hb_004041_050 Hb_005622_020--Hb_004041_050 Hb_006634_100 Hb_006634_100 Hb_005622_020--Hb_006634_100 Hb_003050_360 Hb_003050_360 Hb_005622_020--Hb_003050_360 Hb_002028_110 Hb_002028_110 Hb_005622_020--Hb_002028_110 Hb_000193_340 Hb_000193_340 Hb_005622_020--Hb_000193_340 Hb_003197_010--Hb_000077_360 Hb_004102_010 Hb_004102_010 Hb_003197_010--Hb_004102_010 Hb_017358_070 Hb_017358_070 Hb_003197_010--Hb_017358_070 Hb_003197_010--Hb_000477_040 Hb_000445_120 Hb_000445_120 Hb_003197_010--Hb_000445_120 Hb_008279_030 Hb_008279_030 Hb_003813_180--Hb_008279_030 Hb_008725_080 Hb_008725_080 Hb_003813_180--Hb_008725_080 Hb_105959_010 Hb_105959_010 Hb_003813_180--Hb_105959_010 Hb_011004_050 Hb_011004_050 Hb_003813_180--Hb_011004_050 Hb_002662_040 Hb_002662_040 Hb_003813_180--Hb_002662_040 Hb_002284_220 Hb_002284_220 Hb_005470_030--Hb_002284_220 Hb_000110_060 Hb_000110_060 Hb_005470_030--Hb_000110_060 Hb_005470_030--Hb_000477_040 Hb_002486_020 Hb_002486_020 Hb_005470_030--Hb_002486_020 Hb_000849_120 Hb_000849_120 Hb_005470_030--Hb_000849_120 Hb_020437_020 Hb_020437_020 Hb_005470_030--Hb_020437_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113829 0.0652677 1.1491 1.29872 0.00639323 0.0246589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0464853 0.0243866 1.16499 0.358012 1.35123

CAGE analysis