Hb_003197_010

Information

Type -
Description -
Location Contig3197: 12274-23378
Sequence    

Annotation

kegg
ID rcu:RCOM_1590780
description hypothetical protein
nr
ID XP_002510230.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7D7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1590780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33668: 13384-13562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003197_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000077_360 0.1797639426 - - sugar transporter, putative [Ricinus communis]
3 Hb_004102_010 0.1942115707 - - F-box family protein [Theobroma cacao]
4 Hb_001488_190 0.1981619203 - - alpha-amylase, putative [Ricinus communis]
5 Hb_017358_070 0.2005795595 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
6 Hb_000477_040 0.2032485387 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000445_120 0.205737518 - - ATP binding protein, putative [Ricinus communis]
8 Hb_183963_010 0.2064934746 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
9 Hb_007534_060 0.2153294923 - - protein binding protein, putative [Ricinus communis]
10 Hb_002886_010 0.2164074112 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002150_070 0.2187511696 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
12 Hb_005470_030 0.2220875813 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
13 Hb_000834_070 0.2232639172 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
14 Hb_121089_050 0.2261756041 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004041_050 0.2270054533 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_000264_040 0.2310371224 - - sugar transporter, putative [Ricinus communis]
17 Hb_002759_050 0.2361670871 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
18 Hb_005228_040 0.2456842273 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
19 Hb_000454_040 0.2459364571 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
20 Hb_000849_120 0.2466983457 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_003197_010 Hb_003197_010 Hb_000077_360 Hb_000077_360 Hb_003197_010--Hb_000077_360 Hb_004102_010 Hb_004102_010 Hb_003197_010--Hb_004102_010 Hb_001488_190 Hb_001488_190 Hb_003197_010--Hb_001488_190 Hb_017358_070 Hb_017358_070 Hb_003197_010--Hb_017358_070 Hb_000477_040 Hb_000477_040 Hb_003197_010--Hb_000477_040 Hb_000445_120 Hb_000445_120 Hb_003197_010--Hb_000445_120 Hb_132840_070 Hb_132840_070 Hb_000077_360--Hb_132840_070 Hb_000106_030 Hb_000106_030 Hb_000077_360--Hb_000106_030 Hb_005976_010 Hb_005976_010 Hb_000077_360--Hb_005976_010 Hb_007534_060 Hb_007534_060 Hb_000077_360--Hb_007534_060 Hb_000077_360--Hb_000477_040 Hb_000365_370 Hb_000365_370 Hb_004102_010--Hb_000365_370 Hb_004102_010--Hb_017358_070 Hb_000834_070 Hb_000834_070 Hb_004102_010--Hb_000834_070 Hb_000389_050 Hb_000389_050 Hb_004102_010--Hb_000389_050 Hb_000107_510 Hb_000107_510 Hb_004102_010--Hb_000107_510 Hb_000454_040 Hb_000454_040 Hb_001488_190--Hb_000454_040 Hb_001488_190--Hb_007534_060 Hb_005622_020 Hb_005622_020 Hb_001488_190--Hb_005622_020 Hb_003813_180 Hb_003813_180 Hb_001488_190--Hb_003813_180 Hb_005470_030 Hb_005470_030 Hb_001488_190--Hb_005470_030 Hb_047418_010 Hb_047418_010 Hb_017358_070--Hb_047418_010 Hb_005563_010 Hb_005563_010 Hb_017358_070--Hb_005563_010 Hb_005144_120 Hb_005144_120 Hb_017358_070--Hb_005144_120 Hb_000328_010 Hb_000328_010 Hb_017358_070--Hb_000328_010 Hb_004236_040 Hb_004236_040 Hb_017358_070--Hb_004236_040 Hb_000477_040--Hb_005470_030 Hb_003878_050 Hb_003878_050 Hb_000477_040--Hb_003878_050 Hb_000849_120 Hb_000849_120 Hb_000477_040--Hb_000849_120 Hb_000110_060 Hb_000110_060 Hb_000477_040--Hb_000110_060 Hb_000465_320 Hb_000465_320 Hb_000477_040--Hb_000465_320 Hb_001904_050 Hb_001904_050 Hb_000477_040--Hb_001904_050 Hb_000264_040 Hb_000264_040 Hb_000445_120--Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_000445_120--Hb_002886_010 Hb_000189_440 Hb_000189_440 Hb_000445_120--Hb_000189_440 Hb_000805_010 Hb_000805_010 Hb_000445_120--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_000445_120--Hb_000649_040 Hb_002759_050 Hb_002759_050 Hb_000445_120--Hb_002759_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.036691 0.0331407 0.639827 1.2129 0.00627186 0.006232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0759995 0.251182 1.00599 0.137614 1.75944

CAGE analysis