Hb_000264_040

Information

Type -
Description -
Location Contig264: 18967-21964
Sequence    

Annotation

kegg
ID rcu:RCOM_0935410
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002519026.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q0WUU6
description Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1
trembl
ID B9RZ57
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_0935410 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable polyol transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27583: 21409-21885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_040 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_002886_010 0.089123531 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000445_120 0.1114219274 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002759_050 0.1205535 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
5 Hb_000301_040 0.1241476159 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
6 Hb_005730_060 0.1609323162 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
7 Hb_000200_360 0.1647508427 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
8 Hb_002968_050 0.1706391941 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_000438_120 0.1728964328 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_001538_080 0.1751469771 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
11 Hb_000579_110 0.1772891637 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
12 Hb_001959_100 0.1777649953 - - ammonium transporter, putative [Ricinus communis]
13 Hb_010810_060 0.1791111085 - - sterol desaturase, putative [Ricinus communis]
14 Hb_004586_270 0.1794600607 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
15 Hb_008112_020 0.1849811592 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
16 Hb_000235_040 0.1866414668 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
17 Hb_000649_040 0.1875675478 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
18 Hb_002045_030 0.1909561819 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]
19 Hb_019516_070 0.192602042 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
20 Hb_169383_010 0.1933084143 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000264_040 Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_000264_040--Hb_002886_010 Hb_000445_120 Hb_000445_120 Hb_000264_040--Hb_000445_120 Hb_002759_050 Hb_002759_050 Hb_000264_040--Hb_002759_050 Hb_000301_040 Hb_000301_040 Hb_000264_040--Hb_000301_040 Hb_005730_060 Hb_005730_060 Hb_000264_040--Hb_005730_060 Hb_000200_360 Hb_000200_360 Hb_000264_040--Hb_000200_360 Hb_002886_010--Hb_000445_120 Hb_002886_010--Hb_002759_050 Hb_002886_010--Hb_000301_040 Hb_001959_100 Hb_001959_100 Hb_002886_010--Hb_001959_100 Hb_002886_010--Hb_000200_360 Hb_000189_440 Hb_000189_440 Hb_000445_120--Hb_000189_440 Hb_000805_010 Hb_000805_010 Hb_000445_120--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_000445_120--Hb_000649_040 Hb_000445_120--Hb_002759_050 Hb_003261_010 Hb_003261_010 Hb_002759_050--Hb_003261_010 Hb_002759_050--Hb_000200_360 Hb_002759_050--Hb_001959_100 Hb_169383_010 Hb_169383_010 Hb_000301_040--Hb_169383_010 Hb_001006_110 Hb_001006_110 Hb_000301_040--Hb_001006_110 Hb_000301_040--Hb_001959_100 Hb_000301_040--Hb_000200_360 Hb_010810_060 Hb_010810_060 Hb_005730_060--Hb_010810_060 Hb_027472_060 Hb_027472_060 Hb_005730_060--Hb_027472_060 Hb_003835_080 Hb_003835_080 Hb_005730_060--Hb_003835_080 Hb_001538_080 Hb_001538_080 Hb_005730_060--Hb_001538_080 Hb_001159_230 Hb_001159_230 Hb_005730_060--Hb_001159_230 Hb_000031_180 Hb_000031_180 Hb_005730_060--Hb_000031_180 Hb_000200_360--Hb_001959_100 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000227_100 Hb_000227_100 Hb_000200_360--Hb_000227_100 Hb_000200_360--Hb_003261_010 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000340_240 Hb_000340_240 Hb_000200_360--Hb_000340_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00945596 0.0593342 1.48859 2.98855 0.00946859 0.00827318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.21484 0.321185 0.385125 0.107561 3.89904

CAGE analysis