Hb_001959_100

Information

Type -
Description -
Location Contig1959: 105797-107155
Sequence    

Annotation

kegg
ID rcu:RCOM_1024140
description ammonium transporter, putative
nr
ID XP_002518202.1
description ammonium transporter, putative [Ricinus communis]
swissprot
ID P54144
description Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1
trembl
ID B9RWT3
description Ammonium transporter OS=Ricinus communis GN=RCOM_1024140 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 1 member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19630: 106413-106636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_100 0.0 - - ammonium transporter, putative [Ricinus communis]
2 Hb_000340_240 0.0823941945 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012760_120 0.1094529783 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
4 Hb_000200_360 0.111515519 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
5 Hb_000538_110 0.1180141216 - - sucrose synthase 1 [Hevea brasiliensis]
6 Hb_000227_100 0.1274597416 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
7 Hb_011214_080 0.12884639 - - sucrose synthase 1 [Hevea brasiliensis]
8 Hb_012633_060 0.1361107738 - - laccase, putative [Ricinus communis]
9 Hb_003261_010 0.1401065789 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
10 Hb_000739_280 0.1445043204 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_000220_060 0.1470366544 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
12 Hb_001097_030 0.1484893242 - - nuclear transport factor, putative [Ricinus communis]
13 Hb_000301_040 0.1506439727 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
14 Hb_002119_150 0.1526961846 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
15 Hb_003090_240 0.1561199536 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
16 Hb_189208_080 0.1568643104 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
17 Hb_003038_070 0.1573862045 - - syntaxin, putative [Ricinus communis]
18 Hb_000879_220 0.1577697006 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
19 Hb_002968_050 0.1585217839 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_000417_220 0.1590665428 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]

Gene co-expression network

sample Hb_001959_100 Hb_001959_100 Hb_000340_240 Hb_000340_240 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_000200_360 Hb_000200_360 Hb_001959_100--Hb_000200_360 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_000227_100 Hb_000227_100 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_000340_240--Hb_012760_120 Hb_000220_060 Hb_000220_060 Hb_000340_240--Hb_000220_060 Hb_000340_240--Hb_000538_110 Hb_010738_020 Hb_010738_020 Hb_000340_240--Hb_010738_020 Hb_000340_240--Hb_011214_080 Hb_012760_120--Hb_011214_080 Hb_012760_120--Hb_000538_110 Hb_018487_040 Hb_018487_040 Hb_012760_120--Hb_018487_040 Hb_001488_160 Hb_001488_160 Hb_012760_120--Hb_001488_160 Hb_005483_040 Hb_005483_040 Hb_012760_120--Hb_005483_040 Hb_002044_070 Hb_002044_070 Hb_012760_120--Hb_002044_070 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000200_360--Hb_000227_100 Hb_003261_010 Hb_003261_010 Hb_000200_360--Hb_003261_010 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000200_360--Hb_000340_240 Hb_001097_030 Hb_001097_030 Hb_000538_110--Hb_001097_030 Hb_000538_110--Hb_011214_080 Hb_005062_100 Hb_005062_100 Hb_000538_110--Hb_005062_100 Hb_002119_150 Hb_002119_150 Hb_000538_110--Hb_002119_150 Hb_000029_210 Hb_000029_210 Hb_000538_110--Hb_000029_210 Hb_000227_100--Hb_012760_120 Hb_008112_020 Hb_008112_020 Hb_000227_100--Hb_008112_020 Hb_004979_050 Hb_004979_050 Hb_000227_100--Hb_004979_050 Hb_003090_240 Hb_003090_240 Hb_000227_100--Hb_003090_240 Hb_000227_100--Hb_000684_400 Hb_189208_080 Hb_189208_080 Hb_011214_080--Hb_189208_080 Hb_011214_080--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_011214_080--Hb_002250_040 Hb_002675_220 Hb_002675_220 Hb_011214_080--Hb_002675_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.145715 1.01207 4.79573 18.1652 0 0.0739689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40075 0.881554 0.773248 0.440489 36.0346

CAGE analysis