Hb_000340_240

Information

Type -
Description -
Location Contig340: 221514-222293
Sequence    

Annotation

kegg
ID rcu:RCOM_0647890
description hypothetical protein
nr
ID XP_002524801.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFN2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0647890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35548: 221267-221623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001959_100 0.0823941945 - - ammonium transporter, putative [Ricinus communis]
3 Hb_012760_120 0.1136509457 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
4 Hb_000220_060 0.1146330209 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
5 Hb_000538_110 0.128539048 - - sucrose synthase 1 [Hevea brasiliensis]
6 Hb_010738_020 0.1324699956 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_011214_080 0.1337957452 - - sucrose synthase 1 [Hevea brasiliensis]
8 Hb_003038_070 0.1402338603 - - syntaxin, putative [Ricinus communis]
9 Hb_189208_080 0.1406836964 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
10 Hb_003261_010 0.1415935772 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
11 Hb_012633_060 0.1435428069 - - laccase, putative [Ricinus communis]
12 Hb_000227_100 0.1502841203 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
13 Hb_000200_360 0.155773197 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
14 Hb_002675_220 0.1598220565 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
15 Hb_005062_100 0.1616652354 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
16 Hb_002250_040 0.1626245196 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
17 Hb_018487_040 0.163347353 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
18 Hb_001097_030 0.1637553605 - - nuclear transport factor, putative [Ricinus communis]
19 Hb_000260_520 0.1638954348 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000739_280 0.1651978995 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000340_240 Hb_000340_240 Hb_001959_100 Hb_001959_100 Hb_000340_240--Hb_001959_100 Hb_012760_120 Hb_012760_120 Hb_000340_240--Hb_012760_120 Hb_000220_060 Hb_000220_060 Hb_000340_240--Hb_000220_060 Hb_000538_110 Hb_000538_110 Hb_000340_240--Hb_000538_110 Hb_010738_020 Hb_010738_020 Hb_000340_240--Hb_010738_020 Hb_011214_080 Hb_011214_080 Hb_000340_240--Hb_011214_080 Hb_001959_100--Hb_012760_120 Hb_000200_360 Hb_000200_360 Hb_001959_100--Hb_000200_360 Hb_001959_100--Hb_000538_110 Hb_000227_100 Hb_000227_100 Hb_001959_100--Hb_000227_100 Hb_001959_100--Hb_011214_080 Hb_012760_120--Hb_011214_080 Hb_012760_120--Hb_000538_110 Hb_018487_040 Hb_018487_040 Hb_012760_120--Hb_018487_040 Hb_001488_160 Hb_001488_160 Hb_012760_120--Hb_001488_160 Hb_005483_040 Hb_005483_040 Hb_012760_120--Hb_005483_040 Hb_002044_070 Hb_002044_070 Hb_012760_120--Hb_002044_070 Hb_189208_080 Hb_189208_080 Hb_000220_060--Hb_189208_080 Hb_003038_070 Hb_003038_070 Hb_000220_060--Hb_003038_070 Hb_000220_060--Hb_011214_080 Hb_000220_060--Hb_010738_020 Hb_001105_150 Hb_001105_150 Hb_000220_060--Hb_001105_150 Hb_001097_030 Hb_001097_030 Hb_000538_110--Hb_001097_030 Hb_000538_110--Hb_011214_080 Hb_005062_100 Hb_005062_100 Hb_000538_110--Hb_005062_100 Hb_002119_150 Hb_002119_150 Hb_000538_110--Hb_002119_150 Hb_000029_210 Hb_000029_210 Hb_000538_110--Hb_000029_210 Hb_000186_160 Hb_000186_160 Hb_010738_020--Hb_000186_160 Hb_010738_020--Hb_011214_080 Hb_010738_020--Hb_012760_120 Hb_010738_020--Hb_018487_040 Hb_011214_080--Hb_189208_080 Hb_011214_080--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_011214_080--Hb_002250_040 Hb_002675_220 Hb_002675_220 Hb_011214_080--Hb_002675_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.117368 0.517684 2.26278 0 0.0268236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139604 0.0548831 0.198085 0.0222345 5.38447

CAGE analysis