Hb_000220_060

Information

Type transcription factor
Description TF Family: C3H
Location Contig220: 98565-101182
Sequence    

Annotation

kegg
ID rcu:RCOM_0577410
description zinc finger protein, putative
nr
ID XP_012075708.1
description PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
swissprot
ID Q9C9F5
description Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1
trembl
ID A0A067KRU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09298 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_060 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
2 Hb_189208_080 0.1106326833 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
3 Hb_003038_070 0.1131959304 - - syntaxin, putative [Ricinus communis]
4 Hb_000340_240 0.1146330209 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011214_080 0.1217808703 - - sucrose synthase 1 [Hevea brasiliensis]
6 Hb_010738_020 0.1240680767 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_001105_150 0.1352178964 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
8 Hb_000155_230 0.1384166735 - - rac gtpase, putative [Ricinus communis]
9 Hb_000538_110 0.1403350886 - - sucrose synthase 1 [Hevea brasiliensis]
10 Hb_008695_060 0.1437984503 - - unknown [Populus trichocarpa x Populus deltoides]
11 Hb_002675_220 0.1454522208 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
12 Hb_001959_100 0.1470366544 - - ammonium transporter, putative [Ricinus communis]
13 Hb_001123_300 0.1482600898 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
14 Hb_002960_180 0.1488949888 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
15 Hb_000920_340 0.1496111601 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_001104_070 0.1500496946 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
17 Hb_140595_030 0.1513350289 - - -
18 Hb_002250_040 0.1517017643 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
19 Hb_002929_040 0.1523521604 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000260_520 0.1537103482 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000220_060 Hb_000220_060 Hb_189208_080 Hb_189208_080 Hb_000220_060--Hb_189208_080 Hb_003038_070 Hb_003038_070 Hb_000220_060--Hb_003038_070 Hb_000340_240 Hb_000340_240 Hb_000220_060--Hb_000340_240 Hb_011214_080 Hb_011214_080 Hb_000220_060--Hb_011214_080 Hb_010738_020 Hb_010738_020 Hb_000220_060--Hb_010738_020 Hb_001105_150 Hb_001105_150 Hb_000220_060--Hb_001105_150 Hb_001104_070 Hb_001104_070 Hb_189208_080--Hb_001104_070 Hb_000920_340 Hb_000920_340 Hb_189208_080--Hb_000920_340 Hb_002675_220 Hb_002675_220 Hb_189208_080--Hb_002675_220 Hb_140595_030 Hb_140595_030 Hb_189208_080--Hb_140595_030 Hb_189208_080--Hb_011214_080 Hb_000260_520 Hb_000260_520 Hb_189208_080--Hb_000260_520 Hb_000155_230 Hb_000155_230 Hb_003038_070--Hb_000155_230 Hb_028818_020 Hb_028818_020 Hb_003038_070--Hb_028818_020 Hb_001123_300 Hb_001123_300 Hb_003038_070--Hb_001123_300 Hb_003038_070--Hb_001105_150 Hb_000538_110 Hb_000538_110 Hb_003038_070--Hb_000538_110 Hb_008695_060 Hb_008695_060 Hb_003038_070--Hb_008695_060 Hb_001959_100 Hb_001959_100 Hb_000340_240--Hb_001959_100 Hb_012760_120 Hb_012760_120 Hb_000340_240--Hb_012760_120 Hb_000340_240--Hb_000538_110 Hb_000340_240--Hb_010738_020 Hb_000340_240--Hb_011214_080 Hb_011214_080--Hb_000538_110 Hb_011214_080--Hb_012760_120 Hb_018487_040 Hb_018487_040 Hb_011214_080--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_011214_080--Hb_002250_040 Hb_011214_080--Hb_002675_220 Hb_000186_160 Hb_000186_160 Hb_010738_020--Hb_000186_160 Hb_010738_020--Hb_011214_080 Hb_010738_020--Hb_012760_120 Hb_010738_020--Hb_018487_040 Hb_001105_150--Hb_000155_230 Hb_001105_150--Hb_028818_020 Hb_001105_150--Hb_140595_030 Hb_001105_150--Hb_001123_300 Hb_001105_150--Hb_002675_220 Hb_001105_150--Hb_001104_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.076313 0.532311 1.42084 10.2872 0.0255315 0.110308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.505047 0.670682 0.0555563 26.2574

CAGE analysis