Hb_003038_070

Information

Type -
Description -
Location Contig3038: 38417-45256
Sequence    

Annotation

kegg
ID rcu:RCOM_0535810
description syntaxin, putative
nr
ID XP_002521564.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q9ZPV9
description Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2
trembl
ID B9S6E5
description Syntaxin, putative OS=Ricinus communis GN=RCOM_0535810 PE=4 SV=1
Gene Ontology
ID GO:0005634
description low quality protein: syntaxin-112

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32036: 38633-38743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_070 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_000155_230 0.0965020067 - - rac gtpase, putative [Ricinus communis]
3 Hb_028818_020 0.0972394993 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
4 Hb_001123_300 0.1018338376 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
5 Hb_001105_150 0.1033294957 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
6 Hb_000538_110 0.1065838339 - - sucrose synthase 1 [Hevea brasiliensis]
7 Hb_008695_060 0.110737854 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_000220_060 0.1131959304 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
9 Hb_000254_080 0.1187282892 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
10 Hb_002170_030 0.1217966587 - - PREDICTED: laccase-4-like [Jatropha curcas]
11 Hb_008705_080 0.1248234177 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
12 Hb_006351_090 0.1251493462 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
13 Hb_004994_230 0.1258606696 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
14 Hb_189208_080 0.1272404367 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
15 Hb_140595_030 0.1274003722 - - -
16 Hb_034507_030 0.1276112455 - - PREDICTED: laccase-4-like [Jatropha curcas]
17 Hb_001097_030 0.1280042959 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_008518_060 0.1280112418 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
19 Hb_000462_040 0.1289905748 - - ATSMC2, putative [Ricinus communis]
20 Hb_000029_210 0.1291040767 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003038_070 Hb_003038_070 Hb_000155_230 Hb_000155_230 Hb_003038_070--Hb_000155_230 Hb_028818_020 Hb_028818_020 Hb_003038_070--Hb_028818_020 Hb_001123_300 Hb_001123_300 Hb_003038_070--Hb_001123_300 Hb_001105_150 Hb_001105_150 Hb_003038_070--Hb_001105_150 Hb_000538_110 Hb_000538_110 Hb_003038_070--Hb_000538_110 Hb_008695_060 Hb_008695_060 Hb_003038_070--Hb_008695_060 Hb_000155_230--Hb_001105_150 Hb_000155_230--Hb_028818_020 Hb_140595_030 Hb_140595_030 Hb_000155_230--Hb_140595_030 Hb_000155_230--Hb_001123_300 Hb_101705_040 Hb_101705_040 Hb_000155_230--Hb_101705_040 Hb_140595_020 Hb_140595_020 Hb_000155_230--Hb_140595_020 Hb_028818_020--Hb_001105_150 Hb_028818_020--Hb_001123_300 Hb_004994_230 Hb_004994_230 Hb_028818_020--Hb_004994_230 Hb_028818_020--Hb_101705_040 Hb_034507_030 Hb_034507_030 Hb_028818_020--Hb_034507_030 Hb_001123_300--Hb_008695_060 Hb_000462_040 Hb_000462_040 Hb_001123_300--Hb_000462_040 Hb_008705_080 Hb_008705_080 Hb_001123_300--Hb_008705_080 Hb_001123_300--Hb_034507_030 Hb_001105_150--Hb_140595_030 Hb_001105_150--Hb_001123_300 Hb_002675_220 Hb_002675_220 Hb_001105_150--Hb_002675_220 Hb_001104_070 Hb_001104_070 Hb_001105_150--Hb_001104_070 Hb_001097_030 Hb_001097_030 Hb_000538_110--Hb_001097_030 Hb_011214_080 Hb_011214_080 Hb_000538_110--Hb_011214_080 Hb_005062_100 Hb_005062_100 Hb_000538_110--Hb_005062_100 Hb_002119_150 Hb_002119_150 Hb_000538_110--Hb_002119_150 Hb_000029_210 Hb_000029_210 Hb_000538_110--Hb_000029_210 Hb_012760_120 Hb_012760_120 Hb_000538_110--Hb_012760_120 Hb_008695_060--Hb_028818_020 Hb_008695_060--Hb_008705_080 Hb_008695_060--Hb_001105_150 Hb_002170_030 Hb_002170_030 Hb_008695_060--Hb_002170_030 Hb_008695_060--Hb_000155_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.161915 0.277415 2.98239 0 0.0357828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0224503 0.0846023 0.0984727 5.324

CAGE analysis