Hb_001123_300

Information

Type -
Description -
Location Contig1123: 279425-280769
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16270g
description POPTRDRAFT_554704; hypothetical protein
nr
ID XP_002304647.1
description hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
swissprot
ID Q66GR8
description Protein NETWORKED 3A OS=Arabidopsis thaliana GN=NET3A PE=2 SV=1
trembl
ID B9GZ37
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16270g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03766: 280216-280830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_300 0.0 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
2 Hb_008695_060 0.0594341376 - - unknown [Populus trichocarpa x Populus deltoides]
3 Hb_028818_020 0.0622652675 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
4 Hb_000462_040 0.0642894275 - - ATSMC2, putative [Ricinus communis]
5 Hb_008705_080 0.0668988421 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
6 Hb_034507_030 0.0809067415 - - PREDICTED: laccase-4-like [Jatropha curcas]
7 Hb_000155_230 0.0809780219 - - rac gtpase, putative [Ricinus communis]
8 Hb_001105_150 0.0822249812 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
9 Hb_004994_230 0.0831070525 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
10 Hb_002170_030 0.0834143603 - - PREDICTED: laccase-4-like [Jatropha curcas]
11 Hb_000805_060 0.0850992343 - - laccase, putative [Ricinus communis]
12 Hb_006483_020 0.0868788864 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
13 Hb_001014_180 0.0949926496 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
14 Hb_006351_090 0.0975254678 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
15 Hb_007281_010 0.0985770795 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_026198_080 0.0992347655 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
17 Hb_003038_070 0.1018338376 - - syntaxin, putative [Ricinus communis]
18 Hb_101705_040 0.1030730215 - - cytochrome P450, putative [Ricinus communis]
19 Hb_003906_080 0.1043021696 - - Peroxidase 66 precursor, putative [Ricinus communis]
20 Hb_008518_060 0.1048469382 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_300 Hb_001123_300 Hb_008695_060 Hb_008695_060 Hb_001123_300--Hb_008695_060 Hb_028818_020 Hb_028818_020 Hb_001123_300--Hb_028818_020 Hb_000462_040 Hb_000462_040 Hb_001123_300--Hb_000462_040 Hb_008705_080 Hb_008705_080 Hb_001123_300--Hb_008705_080 Hb_034507_030 Hb_034507_030 Hb_001123_300--Hb_034507_030 Hb_000155_230 Hb_000155_230 Hb_001123_300--Hb_000155_230 Hb_008695_060--Hb_028818_020 Hb_008695_060--Hb_008705_080 Hb_001105_150 Hb_001105_150 Hb_008695_060--Hb_001105_150 Hb_002170_030 Hb_002170_030 Hb_008695_060--Hb_002170_030 Hb_008695_060--Hb_000155_230 Hb_028818_020--Hb_000155_230 Hb_028818_020--Hb_001105_150 Hb_004994_230 Hb_004994_230 Hb_028818_020--Hb_004994_230 Hb_101705_040 Hb_101705_040 Hb_028818_020--Hb_101705_040 Hb_028818_020--Hb_034507_030 Hb_007281_010 Hb_007281_010 Hb_000462_040--Hb_007281_010 Hb_001712_030 Hb_001712_030 Hb_000462_040--Hb_001712_030 Hb_000462_040--Hb_034507_030 Hb_006483_020 Hb_006483_020 Hb_000462_040--Hb_006483_020 Hb_000462_040--Hb_008705_080 Hb_008705_080--Hb_002170_030 Hb_026198_080 Hb_026198_080 Hb_008705_080--Hb_026198_080 Hb_000805_060 Hb_000805_060 Hb_008705_080--Hb_000805_060 Hb_001053_120 Hb_001053_120 Hb_008705_080--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_008705_080--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_008705_080--Hb_006351_090 Hb_034507_030--Hb_004994_230 Hb_034507_030--Hb_006483_020 Hb_001014_180 Hb_001014_180 Hb_034507_030--Hb_001014_180 Hb_000090_010 Hb_000090_010 Hb_034507_030--Hb_000090_010 Hb_034507_030--Hb_007281_010 Hb_000155_230--Hb_001105_150 Hb_140595_030 Hb_140595_030 Hb_000155_230--Hb_140595_030 Hb_000155_230--Hb_101705_040 Hb_140595_020 Hb_140595_020 Hb_000155_230--Hb_140595_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0816551 1.40883 1.45704 19.6406 0.0372877 0.0374169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.138262 0 0.110916 31.1399

CAGE analysis