Hb_034507_030

Information

Type -
Description -
Location Contig34507: 56460-59593
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11950g
description POPTRDRAFT_825321; hypothetical protein
nr
ID XP_012087905.1
description PREDICTED: laccase-4-like [Jatropha curcas]
swissprot
ID O80434
description Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2
trembl
ID B9IG56
description Laccase OS=Populus trichocarpa GN=POPTR_0016s11950g PE=3 SV=2
Gene Ontology
ID GO:0048046
description laccase-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36053: 56413-59583 , PASA_asmbl_36054: 58497-59117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034507_030 0.0 - - PREDICTED: laccase-4-like [Jatropha curcas]
2 Hb_004994_230 0.0312347668 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
3 Hb_006483_020 0.0484534874 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
4 Hb_001014_180 0.0562997854 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
5 Hb_000090_010 0.0594368604 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
6 Hb_000462_040 0.0646116673 - - ATSMC2, putative [Ricinus communis]
7 Hb_007281_010 0.0647378947 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_004117_230 0.0660909063 - - lipid transfer precursor protein [Hevea brasiliensis]
9 Hb_000805_060 0.0695648252 - - laccase, putative [Ricinus communis]
10 Hb_002311_020 0.0753105748 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
11 Hb_008705_080 0.0772412829 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
12 Hb_003972_070 0.0796475409 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
13 Hb_028818_020 0.080875399 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
14 Hb_001123_300 0.0809067415 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
15 Hb_006351_090 0.0814894628 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
16 Hb_004920_150 0.0876732708 - - conserved hypothetical protein [Ricinus communis]
17 Hb_101705_040 0.0903340215 - - cytochrome P450, putative [Ricinus communis]
18 Hb_026198_080 0.0928952461 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
19 Hb_002311_010 0.0938870943 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
20 Hb_003906_080 0.09575446 - - Peroxidase 66 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_034507_030 Hb_034507_030 Hb_004994_230 Hb_004994_230 Hb_034507_030--Hb_004994_230 Hb_006483_020 Hb_006483_020 Hb_034507_030--Hb_006483_020 Hb_001014_180 Hb_001014_180 Hb_034507_030--Hb_001014_180 Hb_000090_010 Hb_000090_010 Hb_034507_030--Hb_000090_010 Hb_000462_040 Hb_000462_040 Hb_034507_030--Hb_000462_040 Hb_007281_010 Hb_007281_010 Hb_034507_030--Hb_007281_010 Hb_004994_230--Hb_000090_010 Hb_101705_040 Hb_101705_040 Hb_004994_230--Hb_101705_040 Hb_004994_230--Hb_006483_020 Hb_002311_020 Hb_002311_020 Hb_004994_230--Hb_002311_020 Hb_000805_060 Hb_000805_060 Hb_004994_230--Hb_000805_060 Hb_006483_020--Hb_000462_040 Hb_004117_230 Hb_004117_230 Hb_006483_020--Hb_004117_230 Hb_006483_020--Hb_000090_010 Hb_006483_020--Hb_007281_010 Hb_001014_180--Hb_007281_010 Hb_003972_070 Hb_003972_070 Hb_001014_180--Hb_003972_070 Hb_001014_180--Hb_004117_230 Hb_001014_180--Hb_000462_040 Hb_002311_010 Hb_002311_010 Hb_001014_180--Hb_002311_010 Hb_000090_010--Hb_101705_040 Hb_000090_010--Hb_002311_020 Hb_028818_020 Hb_028818_020 Hb_000090_010--Hb_028818_020 Hb_000462_040--Hb_007281_010 Hb_001712_030 Hb_001712_030 Hb_000462_040--Hb_001712_030 Hb_001123_300 Hb_001123_300 Hb_000462_040--Hb_001123_300 Hb_008705_080 Hb_008705_080 Hb_000462_040--Hb_008705_080 Hb_007281_010--Hb_002311_010 Hb_038927_020 Hb_038927_020 Hb_007281_010--Hb_038927_020 Hb_007281_010--Hb_001712_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00941642 8.40995 6.74598 199.863 0.00942894 0.0720592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0168334 0 1.5798 253.325

CAGE analysis