Hb_140595_020

Information

Type -
Description -
Location Contig140595: 5607-7374
Sequence    

Annotation

kegg
ID sly:101258110
description vegetative cell wall protein gp1-like
nr
ID XP_004248771.2
description PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID K4D0B5
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g049580.1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10997: 5344-6985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140595_020 0.0 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
2 Hb_140595_030 0.0393590795 - - -
3 Hb_001186_040 0.0599183733 - - Peroxidase 3 precursor, putative [Ricinus communis]
4 Hb_000260_520 0.0606103331 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_001104_070 0.0823817088 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
6 Hb_000155_230 0.0863132577 - - rac gtpase, putative [Ricinus communis]
7 Hb_001105_150 0.0870025965 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
8 Hb_028818_020 0.0890646451 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
9 Hb_001269_540 0.0893340675 - - hypothetical protein VITISV_038016 [Vitis vinifera]
10 Hb_002119_150 0.0910692037 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
11 Hb_000230_490 0.092560425 - - conserved hypothetical protein [Ricinus communis]
12 Hb_189208_080 0.0939571147 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
13 Hb_080048_030 0.1017391122 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
14 Hb_000920_340 0.1028510912 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_008727_060 0.1038224424 - - Beta-glucosidase, putative [Ricinus communis]
16 Hb_007718_040 0.1049493068 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
17 Hb_022092_070 0.1060664383 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
18 Hb_000254_080 0.1065663479 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
19 Hb_001123_300 0.1097173235 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
20 Hb_008695_060 0.11244883 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_140595_020 Hb_140595_020 Hb_140595_030 Hb_140595_030 Hb_140595_020--Hb_140595_030 Hb_001186_040 Hb_001186_040 Hb_140595_020--Hb_001186_040 Hb_000260_520 Hb_000260_520 Hb_140595_020--Hb_000260_520 Hb_001104_070 Hb_001104_070 Hb_140595_020--Hb_001104_070 Hb_000155_230 Hb_000155_230 Hb_140595_020--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_020--Hb_001105_150 Hb_140595_030--Hb_000155_230 Hb_140595_030--Hb_001105_150 Hb_140595_030--Hb_001104_070 Hb_000920_340 Hb_000920_340 Hb_140595_030--Hb_000920_340 Hb_140595_030--Hb_000260_520 Hb_001186_040--Hb_140595_030 Hb_000230_490 Hb_000230_490 Hb_001186_040--Hb_000230_490 Hb_022092_070 Hb_022092_070 Hb_001186_040--Hb_022092_070 Hb_001186_040--Hb_000260_520 Hb_008727_060 Hb_008727_060 Hb_001186_040--Hb_008727_060 Hb_000260_520--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_000260_520--Hb_005062_100 Hb_018487_040 Hb_018487_040 Hb_000260_520--Hb_018487_040 Hb_002119_150 Hb_002119_150 Hb_000260_520--Hb_002119_150 Hb_002675_220 Hb_002675_220 Hb_001104_070--Hb_002675_220 Hb_080048_030 Hb_080048_030 Hb_001104_070--Hb_080048_030 Hb_001104_070--Hb_018487_040 Hb_189208_080 Hb_189208_080 Hb_001104_070--Hb_189208_080 Hb_002250_040 Hb_002250_040 Hb_001104_070--Hb_002250_040 Hb_000155_230--Hb_001105_150 Hb_028818_020 Hb_028818_020 Hb_000155_230--Hb_028818_020 Hb_001123_300 Hb_001123_300 Hb_000155_230--Hb_001123_300 Hb_101705_040 Hb_101705_040 Hb_000155_230--Hb_101705_040 Hb_001105_150--Hb_028818_020 Hb_001105_150--Hb_001123_300 Hb_001105_150--Hb_002675_220 Hb_001105_150--Hb_001104_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 15.9637 14.4878 87.5953 0.151303 0.153215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.81714 194.116

CAGE analysis